Merge pull request #201 from ebi-uniprot/2023_05_CHANGES

2023 05 changes
ebi-uniprot · Oct 25, 2023 · 41f7d4e · 41f7d4e
2 parents 918491f + e87570f
commit 41f7d4e
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Showing 4 changed files with 15 additions and 2 deletions.
diff --git a/controlled-vocabulary/src/main/resources/META-INF/drlineconfiguration.json b/controlled-vocabulary/src/main/resources/META-INF/drlineconfiguration.json
@@ -634,6 +634,12 @@
 		"uriLink": "https://www.proteomicsdb.org/proteomicsdb/#protein/proteinDetails/%id",
         "idMappingName": "PROTEOMICSDB_ID"
 	},
+	{
+		"name": "Pumba",
+		"displayName": "Pumba",
+		"category": "PROTEOMIC",
+		"uriLink": "https://pumba.dcsr.unil.ch/lanes/%id"
+	},
 	{
 		"name": "TopDownProteomics",
 		"displayName": "TopDownProteomics",

diff --git a/controlled-vocabulary/src/test/java/org/uniprot/cv/xdb/UniProtKBDatabaseTypesTest.java b/controlled-vocabulary/src/test/java/org/uniprot/cv/xdb/UniProtKBDatabaseTypesTest.java
@@ -304,7 +304,7 @@ void testDatabaseFieldSize() {
                 UniProtDatabaseTypes.INSTANCE.getDBTypesByCategory(GENERIC_VARIATION_DATABASES), 6);
         verifyGroupSize(UniProtDatabaseTypes.INSTANCE.getDBTypesByCategory(D2_GEL_DATABASES), 7);
         verifyGroupSize(
-                UniProtDatabaseTypes.INSTANCE.getDBTypesByCategory(PROTEOMIC_DATABASES), 11);
+                UniProtDatabaseTypes.INSTANCE.getDBTypesByCategory(PROTEOMIC_DATABASES), 12);
         verifyGroupSize(
                 UniProtDatabaseTypes.INSTANCE.getDBTypesByCategory(
                         PROTOCOLS_AND_MATERIALS_DATABASES),

diff --git a/core-domain/src/main/java/org/uniprot/core/uniprotkb/evidence/EvidenceDatabaseTypes.java b/core-domain/src/main/java/org/uniprot/core/uniprotkb/evidence/EvidenceDatabaseTypes.java
@@ -160,6 +160,13 @@ private void init() {
                         "SMART",
                         "A",
                         "http://smart.embl.de/smart/do_annotation.pl?DOMAIN=%value"));
+        typeMap.put(
+                "TAIR",
+                evd(
+                        "TAIR",
+                        "TAIR",
+                        "I",
+                        "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=%value"));
         typeMap.put(
                 "UniRule",
                 evd("UniRule", "UniRule", "A", "https://www.uniprot.org/unirule/%value"));

diff --git a/core-domain/src/test/java/org/uniprot/core/uniprotkb/evidence/EvidenceDatabaseTypesTest.java b/core-domain/src/test/java/org/uniprot/core/uniprotkb/evidence/EvidenceDatabaseTypesTest.java
@@ -24,7 +24,7 @@ void testGetAllEvidenceDatabases() {
         List<EvidenceDatabaseDetail> evidenceDatabases =
                 EvidenceDatabaseTypes.INSTANCE.getAllEvidenceDatabases();
         assertNotNull(evidenceDatabases);
-        assertEquals(51, evidenceDatabases.size());
+        assertEquals(52, evidenceDatabases.size());
     }
 
     @Test