Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Confidence intervals for ICC, it seems that none of the ci_methods work (neither default, boot or analytical). #747

Merged
merged 9 commits into from
Jul 13, 2024
Merged

Confidence intervals for ICC, it seems that none of the ci_methods work (neither default, boot or analytical). #747

Show file tree
Hide file tree
Changes from 1 commit
Commits
Show all changes
9 commits
Select commit Hold shift + click to select a range
aa555c3
Confidence intervals for ICC, it seems that none of the `ci_method`s …
strengejacke Jul 11, 2024
d456c91
ver
strengejacke Jul 11, 2024
715dfed
typo
strengejacke Jul 11, 2024
ee91b02
lintr
strengejacke Jul 13, 2024
f542af8
Merge branch 'main' into strengejacke/issue745
strengejacke Jul 13, 2024
174f2de
require 0.10.0
strengejacke Jul 13, 2024
1f3240b
version 0.20.2
strengejacke Jul 13, 2024
69ed5f5
fix
strengejacke Jul 13, 2024
2c0953f
lintr
strengejacke Jul 13, 2024
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
2 changes: 1 addition & 1 deletion R/helpers.R
View file
Open in desktop
Original file line number Diff line number Diff line change
@@ -1,6 +1,6 @@
# small wrapper around this commonly used try-catch
.safe <- function(code, on_error = NULL) {
if (getOption("easystats_erros", FALSE) && is.null(on_error)) {
if (isTRUE(getOption("easystats_erros", FALSE) && is.null(on_error))) {
code
} else {
tryCatch(code, error = function(e) on_error)
Expand Down
12 changes: 10 additions & 2 deletions R/icc.R
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -591,7 +591,11 @@ print.icc_decomposed <- function(x, digits = 2, ...) {
.boot_icc_fun <- function(data, indices, model, tolerance) {
d <- data[indices, ] # allows boot to select sample
fit <- suppressWarnings(suppressMessages(stats::update(model, data = d)))
vars <- .compute_random_vars(fit, tolerance, verbose = FALSE)
vars <- .compute_random_vars(
fit,
tolerance,
verbose = isTRUE(getOption("easystats_erros", FALSE))
)
if (is.null(vars) || all(is.na(vars))) {
return(c(NA, NA))
}
Expand All @@ -604,7 +608,11 @@ print.icc_decomposed <- function(x, digits = 2, ...) {

# bootstrapping using "lme4::bootMer"
.boot_icc_fun_lme4 <- function(model) {
vars <- .compute_random_vars(model, tolerance = 1e-05, verbose = FALSE)
vars <- .compute_random_vars(
model,
tolerance = 1e-10,
verbose = isTRUE(getOption("easystats_erros", FALSE))
)
if (is.null(vars) || all(is.na(vars))) {
return(c(NA, NA))
}
Expand Down
12 changes: 10 additions & 2 deletions R/r2_nakagawa.R
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -281,7 +281,11 @@ print.r2_nakagawa <- function(x, digits = 3, ...) {
.boot_r2_fun <- function(data, indices, model, tolerance) {
d <- data[indices, ] # allows boot to select sample
fit <- suppressWarnings(suppressMessages(stats::update(model, data = d)))
vars <- .compute_random_vars(fit, tolerance, verbose = FALSE)
vars <- .compute_random_vars(
fit,
tolerance,
verbose = isTRUE(getOption("easystats_erros", FALSE))
)
if (is.null(vars) || all(is.na(vars))) {
return(c(NA, NA))
}
Expand All @@ -298,7 +302,11 @@ print.r2_nakagawa <- function(x, digits = 3, ...) {

# bootstrapping using "lme4::bootMer"
.boot_r2_fun_lme4 <- function(model) {
vars <- .compute_random_vars(model, tolerance = 1e-05, verbose = FALSE)
vars <- .compute_random_vars(
model,
tolerance = 1e-10,
verbose = isTRUE(getOption("easystats_erros", FALSE))
)
if (is.null(vars) || all(is.na(vars))) {
return(c(NA, NA))
}
Expand Down
Loading