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rcannood committed Aug 18, 2022
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2 changes: 1 addition & 1 deletion README.Rmd
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<!-- badges: start -->
[![R-CMD-check](https://github.com/dynverse/babelwhale/workflows/R-CMD-check/badge.svg)](https://github.com/dynverse/babelwhale/actions)
[![CRAN_Status_Badge](https://www.r-pkg.org/badges/version/babelwhale)](https://cran.r-project.org/package=babelwhale)
[![Codecov test coverage](https://codecov.io/gh/dynverse/babelwhale/branch/master/graph/badge.svg)](https://codecov.io/gh/dynverse/babelwhale?branch=master)
[![Codecov test coverage](https://app.codecov.io/gh/dynverse/babelwhale/branch/master/graph/badge.svg)](https://app.codecov.io/gh/dynverse/babelwhale?branch=master)
<!-- badges: end -->

Specify docker or singularity
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2 changes: 1 addition & 1 deletion README.md
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[![R-CMD-check](https://github.com/dynverse/babelwhale/workflows/R-CMD-check/badge.svg)](https://github.com/dynverse/babelwhale/actions)
[![CRAN_Status_Badge](https://www.r-pkg.org/badges/version/babelwhale)](https://cran.r-project.org/package=babelwhale)
[![Codecov test
coverage](https://codecov.io/gh/dynverse/babelwhale/branch/master/graph/badge.svg)](https://codecov.io/gh/dynverse/babelwhale?branch=master)
coverage](https://app.codecov.io/gh/dynverse/babelwhale/branch/master/graph/badge.svg)](https://app.codecov.io/gh/dynverse/babelwhale?branch=master)
<!-- badges: end -->

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30 changes: 14 additions & 16 deletions cran-comments.md
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# babelwhale 1.0.2
# babelwhale 1.1.0

* BUG FIX `test_docker_installation()`: Use `docker info` to check whether docker is available.
* NEW FUNCTIONALITY `run_auto_mount()`: Added helper function for letting `babelwhale` figure out which directories to mount automatically (#26, thanks @joelnitta!).

* BUG FIX: Redirect stdout and stderr to files to avoid processx hangs (#24, thanks @joelnitta!).

* MINOR CHANGE: Change maintainer from Wouter to Robrecht.

## Test environments
* local Fedora 30 installation, R 4.0
* ubuntu (on github actions), R 4.0
* local installation, R release
* ubuntu (on github actions), R release
* ubuntu (on github actions), R devel
* win-builder (via devtools), R release
* win-builder (via devtools), R devel

## R CMD check results
```
> revdepcheck::revdep_check(timeout = as.difftime(600, units = "mins"), num_workers = 30)
── INIT ────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────── Computing revdeps ──
── INSTALL ────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────── 2 versions ──
── INIT ────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────── Computing revdeps ──
── INSTALL ────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────── 2 versions ──
Installing CRAN version of babelwhale
also installing the dependencies ‘fansi’, ‘pkgconfig’, ‘cli’, ‘utf8’, ‘rprojroot’, ‘RcppParallel’, ‘RcppArmadillo’, ‘stringi’, ‘ellipsis’, ‘generics’, ‘glue’, ‘lifecycle’, ‘magrittr’, ‘R6’, ‘rlang’, ‘tibble’, ‘tidyselect’, ‘vctrs’, ‘pillar’, ‘assertthat’, ‘desc’, ‘proxyC’, ‘Rcpp’, ‘remotes’, ‘stringr’, ‘ps’, ‘crayon’, ‘dplyr’, ‘dynutils’, ‘processx’, ‘purrr’
also installing the dependencies ‘glue’, ‘fansi’, ‘pkgconfig’, ‘ellipsis’, ‘cli’, ‘utf8’, ‘rprojroot’, ‘RcppParallel’, ‘RcppArmadillo’, ‘generics’, ‘lifecycle’, ‘R6’, ‘rlang’, ‘tibble’, ‘tidyselect’, ‘vctrs’, ‘pillar’, ‘assertthat’, ‘desc’, ‘proxyC’, ‘Rcpp’, ‘remotes’, ‘ps’, ‘crayon’, ‘dplyr’, ‘dynutils’, ‘processx’, ‘purrr’
Installing DEV version of babelwhale
Installing 31 packages: stringi, magrittr, glue, rlang, RcppArmadillo, RcppParallel, Rcpp, purrr, pkgconfig, utf8, fansi, crayon, cli, pillar, vctrs, tidyselect, tibble, R6, lifecycle, generics, ellipsis, rprojroot, ps, stringr, remotes, proxyC, dplyr, desc, assertthat, processx, dynutils
── CHECK ──────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────── 1 packages ──
✓ dynwrap 1.2.2 ── E: 1 | W: 0 | N: 0
OK: 1
Installing 32 packages: stringi, magrittr, glue, rlang, RcppArmadillo, RcppParallel, Rcpp, purrr, ellipsis, pkgconfig, utf8, fansi, cli, pillar, vctrs, tidyselect, tibble, R6, lifecycle, generics, rprojroot, ps, remotes, proxyC, dplyr, desc, crayon, assertthat, digest, processx, dynutils, fs
── CHECK ──────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────── 1 packages ──
✔ dynwrap 1.2.2 ── E: 1 | W: 0 | N: 0
OK: 1
BROKEN: 0
Total time: 12 min
── REPORT ─────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────
Total time: 11 min
── REPORT ─────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────
Writing summary to 'revdep/README.md'
Writing problems to 'revdep/problems.md'
Writing failures to 'revdep/failures.md'
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# Platform

|field |value |
|:--------|:-------------------------------|
|version |R version 4.0.5 (2021-03-31) |
|os |Fedora 33 (Workstation Edition) |
|system |x86_64, linux-gnu |
|ui |RStudio |
|language |(EN) |
|collate |en_GB.UTF-8 |
|ctype |en_GB.UTF-8 |
|tz |Europe/Brussels |
|date |2021-06-24 |
|field |value |
|:--------|:-----------------------------------------------------------|
|version |R version 4.1.3 (2022-03-10) |
|os |Fedora Linux 35 (Workstation Edition) |
|system |x86_64, linux-gnu |
|ui |RStudio |
|language |(EN) |
|collate |en_GB.UTF-8 |
|ctype |en_GB.UTF-8 |
|tz |Europe/Brussels |
|date |2022-08-18 |
|rstudio |2022.02.3+492 Prairie Trillium (desktop) |
|pandoc |2.14.0.3 @ /usr/libexec/rstudio/bin/pandoc/ (via rmarkdown) |

# Dependencies

|package |old |new |Δ |
|:-------------|:----------|:----------|:--|
|babelwhale |1.0.2 |1.0.3 |* |
|babelwhale |1.0.3 |1.1.0 |* |
|assertthat |0.2.1 |0.2.1 | |
|cli |2.5.0 |2.5.0 | |
|crayon |1.4.1 |1.4.1 | |
|desc |1.3.0 |1.3.0 | |
|dplyr |1.0.7 |1.0.7 | |
|dynutils |1.0.6 |1.0.6 | |
|cli |3.3.0 |3.3.0 | |
|crayon |1.5.1 |1.5.1 | |
|desc |1.4.1 |1.4.1 | |
|digest |NA |0.6.29 |* |
|dplyr |1.0.9 |1.0.9 | |
|dynutils |1.0.9 |1.0.9 | |
|ellipsis |0.3.2 |0.3.2 | |
|fansi |0.5.0 |0.5.0 | |
|generics |0.1.0 |0.1.0 | |
|glue |1.4.2 |1.4.2 | |
|lifecycle |1.0.0 |1.0.0 | |
|magrittr |2.0.1 |2.0.1 | |
|pillar |1.6.1 |1.6.1 | |
|fansi |1.0.3 |1.0.3 | |
|fs |NA |1.5.2 |* |
|generics |0.1.3 |0.1.3 | |
|glue |1.6.2 |1.6.2 | |
|lifecycle |1.0.1 |1.0.1 | |
|magrittr |NA |2.0.3 |* |
|pillar |1.8.0 |1.8.0 | |
|pkgconfig |2.0.3 |2.0.3 | |
|processx |3.5.2 |3.5.2 | |
|proxyC |0.2.0 |0.2.0 | |
|ps |1.6.0 |1.6.0 | |
|processx |3.7.0 |3.7.0 | |
|proxyC |0.3.0 |0.3.0 | |
|ps |1.7.1 |1.7.1 | |
|purrr |0.3.4 |0.3.4 | |
|R6 |2.5.0 |2.5.0 | |
|Rcpp |1.0.6 |1.0.6 | |
|RcppArmadillo |0.10.5.0.0 |0.10.5.0.0 | |
|RcppParallel |5.1.4 |5.1.4 | |
|remotes |2.4.0 |2.4.0 | |
|rlang |0.4.11 |0.4.11 | |
|rprojroot |2.0.2 |2.0.2 | |
|stringi |1.6.2 |1.6.2 | |
|stringr |1.4.0 |1.4.0 | |
|tibble |3.1.2 |3.1.2 | |
|tidyselect |1.1.1 |1.1.1 | |
|utf8 |1.2.1 |1.2.1 | |
|vctrs |0.3.8 |0.3.8 | |
|R6 |2.5.1 |2.5.1 | |
|Rcpp |1.0.9 |1.0.9 | |
|RcppArmadillo |0.11.2.0.0 |0.11.2.0.0 | |
|RcppParallel |5.1.5 |5.1.5 | |
|remotes |2.4.2 |2.4.2 | |
|rlang |1.0.4 |1.0.4 | |
|rprojroot |2.0.3 |2.0.3 | |
|stringi |NA |1.7.8 |* |
|tibble |3.1.8 |3.1.8 | |
|tidyselect |1.1.2 |1.1.2 | |
|utf8 |1.2.2 |1.2.2 | |
|vctrs |0.4.1 |0.4.1 | |

# Revdeps

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