DataJoint Element for Extracellular Electrophysiology

DataJoint Element for extracellular array electrophysiology that processes data acquired with a polytrode probe (e.g. Neuropixels, Neuralynx) using the SpikeGLX or OpenEphys acquisition software and MATLAB-based Kilosort or python-based Kilosort spike sorting software. DataJoint Elements collectively standardize and automate data collection and analysis for neuroscience experiments. Each Element is a modular pipeline for data storage and processing with corresponding database tables that can be combined with other Elements to assemble a fully functional pipeline.

Experiment flowchart

Data Pipeline Diagram

Getting Started

• Install from PyPI

  pip install element-array-ephys

• Interactive tutorial on GitHub Codespaces

• Documentation

Support

• If you need help getting started or run into any errors, please contact our team by email at [email protected].