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127 Open 70 Closed
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Issues list

rsem-extract-reference-transcripts fails with "Error Message: Strand is neither '+' nor '-'!"
#220 opened Aug 21, 2024 by J-Moravec
Single-end fragment length mean and SD
#219 opened Jul 30, 2024 by byqmed
Not sure if rsem is using --num-threads option...
#217 opened Jun 25, 2024 by siyer-broad
bam only containing aligned reads produced different expression profile
#216 opened May 24, 2024 by TwoFlowers1
rsem-generate-ngvector command not found
#215 opened May 3, 2024 by yma122
1
Gtf file
#212 opened Apr 1, 2024 by luisafmc
rsem-parse-alignments and rsem-build-read-index
#211 opened Mar 22, 2024 by project-FSL
rsem-prepare-reference arguments
#209 opened Feb 26, 2024 by baizhantianyu
error when using convert-sam-for-rsem to a RSEM compatible BAM file.
#208 opened Feb 18, 2024 by qxf1995
about gffcompare
#205 opened Oct 7, 2023 by fafuyyk
Problem implementing a reverse-strand specific analysis
#204 opened Aug 12, 2023 by sknaack
2
genomeSAsparseD option for RSEM Star?
#202 opened Jul 25, 2023 by Leelab-623
The SAM/BAM file declares less than one reference sequence!
#201 opened Jun 30, 2023 by Heterosigma
2
how to simulate single-end reads?
#200 opened Jun 9, 2023 by yhg926
import using tximport for the rsem count table to get integers?
#199 opened Jun 8, 2023 by marwa38
gene id
#198 opened May 29, 2023 by km-2021
rsem-calculate-expression
#197 opened May 17, 2023 by km-2021
single-cell-prior is not giving me any values
#196 opened May 16, 2023 by TdzBAS
1
to run RSEM for 3 samples
#195 opened May 3, 2023 by anitha-2211
1
No valid read to estimate the length distribution!
#194 opened Apr 10, 2023 by TdzBAS
1
rsem-prepare-reference with filtered GTF
#193 opened Apr 7, 2023 by TdzBAS
differential splicing simulation
#192 opened Mar 30, 2023 by TdzBAS
Does RSEM need HI:i:<n> tag to correctly process multimappers?
#191 opened Mar 21, 2023 by apredeus
2
Inconsistent results in rsem-plot-model
#190 opened Feb 24, 2023 by sschrstn
"make" error on mac (log attached)
#189 opened Sep 28, 2022 by thisisamirv
1
ProTip! no:milestone will show everything without a milestone.