LLM-SR: Scientific Equation Discovery and Symbolic Regression via Programming with LLMs

Official Implementation of paper LLM-SR: Scientific Equation Discovery via Programming with Large Language Models.

Paper | Data

Overview

In this paper, we introduce LLM-SR, a novel approach for scientific equation discovery and symbolic regression that leverages strengths of Large Language Models (LLMs). LLM-SR combines LLMs' scientific knowledge and code generation capabilities with evolutionary search to discover accurate and interpretable equations from data. The method represents equations as program skeletons, allowing for flexible hypothesis generation guided by domain-specific priors. Experiments on custom benchmark problems across physics, biology, and materials science demonstrate LLM-SR's superior performance compared to state-of-the-art symbolic regression methods, particularly in out-of-domain generalization. The paper also highlights the limitations of common benchmarks and proposes new, challenging datasets for evaluating LLM-based equation discovery methods.

Installation

To run the code, create a conda environment and install the dependencies provided in the requirements.txt or environment.yml:

conda create -n llmsr python=3.11.7
conda activate llmsr
pip install -r requirements.txt

or

conda env create -f environment.yml
conda activate llmsr

Note: Requires Python ≥ 3.9

Datasets

Benchmark datasets studied in this paper are provided in the data/ directory. For details on datasets and generation settings, please refer to paper.

Local Runs (Open-Source LLMs)

Start the local LLM Server

First, start the local LLM engine from huggingface models by using the bash run_server.sh script or running the following command:

cd llm_engine

python engine.py --model_path mistralai/Mixtral-8x7B-Instruct-v0.1 \
                    --gpu_ids [GPU_ID]  \
                    --port [PORT_ID] --quantization

• Set gpu_ids and port parameters based on your server availability

• Change model_path to use a different open-source model from Hugging Face

• quantization activates efficient inference of LLM with quantization on GPUs

• Control quantization level with load_in_4bit and load_in_8bit parameters in engine.py

Run LLM-SR on Local Server

After activating the local LLM server, run the LLM-SR framework on your dataset with the run_llmsr.sh script or running the following command:

python main.py --problem_name [PROBLEM_NAME] \
                   --spec_path [SPEC_PATH] \
                   --log_path [LOG_PATH]

• Update the port id in the url in sampler.py to match the LLM server port

• problem_name refers to the target problem and dataset in data/

• spec_path refers to the initial prompt specification file path in spec/

• Available problem names for datasets: oscillator1, oscillator2, bactgrow, stressstrain

For more example scripts, check run_llmsr.sh.

API Runs (Closed LLMs)

To run LLM-SR with the OpenAI GPT API, use the following command:

export API_KEY=[YOUR_API_KEY_HERE]

python main.py --use_api True \
                   --api_model "gpt-3.5-turbo" \
                   --problem_name [PROBLEM_NAME] \
                   --spec_path [SPEC_PATH] \
                   --log_path [LOG_PATH]

• Replace [YOUR_API_KEY_HERE] with your actual OpenAI API key to set your API key as an environment variable.

• --use_api True: Enables the use of the OpenAI API instead of local LLMs from Hugging Face

• --api_model: Specifies the GPT model to use (e.g., "gpt-3.5-turbo", "gpt-4o")

• --problem_name, --spec_path, --log_path: Set these as in the local runs section

Runs with Torch Hypothesis Optimizer

Most specifications in specs/ use equation program skeleton in numpy templates with scipy BFGS optimizer. LLM-SR can also leverage direct and differentiable optimizers for equation discovery. We provide specifications for the Oscillation 2 example using torch templates with Adam optimizer here.

Note: We observed slightly better performance from numpy+BFGS compared to torch+Adam, mainly due to better proficiency of current LLM backbones in numpy generation.

Configuration

The above commands use default pipeline parameters. To change parameters for experiments, refer to config.py.

Citation

Read our paper for more information about the setup (or contact us ☺️)). If you find our paper or the repo helpful, please cite us with

@article{shojaee2024llm,
  title={Llm-sr: Scientific equation discovery via programming with large language models},
  author={Shojaee, Parshin and Meidani, Kazem and Gupta, Shashank and Farimani, Amir Barati and Reddy, Chandan K},
  journal={arXiv preprint arXiv:2404.18400},
  year={2024}
}

License

This repository is licensed under MIT licence.

This work is built on top of other open source projects, including FunSearch, PySR, and Neural Symbolic Regression that scales. We thank the original contributors of these works for open-sourcing their valuable source codes.

Contact Us

For any questions or issues, you are welcome to open an issue in this repo, or contact us at [email protected], and [email protected] .