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Michele Berselli authored and Michele Berselli committed Jan 31, 2023
1 parent 37333ef commit 5013ef4
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35 changes: 0 additions & 35 deletions portal_objects/file_reference.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -9,38 +9,3 @@ format: tar_gz
version: hg38
uuid: 7a33ce65-80f4-4c65-8229-8c2bbe0c1445
accession: GAPFI6BNMYRO

---

################################################################
# Datasource for the driver catalog
################################################################
name: cgap_genes
description: Genes supported by CGAP. |
Build hg38/GRCh38.
format: tsv_gz
version: 0.4.6
uuid: 335f7c0f-640e-44b9-a0da-bbe2728f782c
accession: GAPFI6BQNY5O

---

name: gene_panel_hartwig
description: Genes to add to the driver catalog. |
From Hartwig Medical Foundation. |
Build hg38/GRCh38.
format: tsv_gz
version: v09132022
uuid: bd334693-b83e-4709-9d96-d8cc3f524848
accession: GAPFI6BNWA1O

---

name: somatic_hotspot_mutations
description: Somatic hotspot locations. |
From Hartwig Medical Foundation. |
Build hg38/GRCh38.
format: vcf_gz
version: v09132022
uuid: 19f548db-5491-464c-babd-a9f4f0b2c8c4
accession: GAPFI6BNWA90
4 changes: 2 additions & 2 deletions portal_objects/metaworkflows/WGS_CNV_somatic_ascat.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -121,7 +121,7 @@ workflows:
config:
instance_type:
- c5.4xlarge
ebs_size: 1.5x
ebs_size: "1.5x"
EBS_optimized: True
spot_instance: True
run_name: run_ascat
Expand Down Expand Up @@ -165,7 +165,7 @@ workflows:
config:
instance_type:
- t3.xlarge
ebs_size: 1.5x
ebs_size: "1.5x"
EBS_optimized: True
spot_instance: True
run_name: run_putative_drivers_cnv
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