fix ci

.github/workflows/main.yaml

@@ -8,12 +8,12 @@ jobs:
     runs-on: ubuntu-latest
     strategy:
       matrix:
-        python-version: ["3.9", "3.10", "3.11", "3.12"]
+        python-version: ["3.9", "3.10", "3.11"]
     steps:
-    - uses: actions/checkout@v3.5.0
+    - uses: actions/checkout@v4
 
     - name: Set up Python ${{ matrix.python-version }}
-      uses: actions/setup-python@v4.3.0
+      uses: actions/setup-python@v5
       with:
         python-version: ${{ matrix.python-version }}
 

.pre-commit-config.yaml

@@ -1,6 +1,6 @@
 repos:
   - repo: https://github.com/psf/black-pre-commit-mirror
-    rev: 23.11.0
+    rev: 24.1.1
     hooks:
       - id: black
   - repo: https://github.com/pycqa/isort

bsb_neuron/__init__.py

@@ -3,9 +3,10 @@
 """
 
 from bsb.simulation import SimulationBackendPlugin
+
+from . import devices
 from .adapter import NeuronAdapter
 from .simulation import NeuronSimulation
-from . import devices
 
 __version__ = "0.0.0b2"
 __plugin__ = SimulationBackendPlugin(Simulation=NeuronSimulation, Adapter=NeuronAdapter)

bsb_neuron/devices/__init__.py

@@ -1,6 +1,6 @@
-from .spike_generator import SpikeGenerator
 from .current_clamp import CurrentClamp
+from .ion_recorder import IonRecorder
+from .spike_generator import SpikeGenerator
+from .synapse_recorder import SynapseRecorder
 from .voltage_clamp import VoltageClamp
 from .voltage_recorder import VoltageRecorder
-from .synapse_recorder import SynapseRecorder
-from .ion_recorder import IonRecorder

bsb_neuron/devices/current_clamp.py

@@ -1,7 +1,8 @@
 from bsb import config
+from bsb.reporting import warn
 from bsb.simulation.targetting import LocationTargetting
+
 from ..device import NeuronDevice
-from bsb.reporting import warn
 
 
 @config.node

bsb_neuron/devices/ion_recorder.py

@@ -1,6 +1,7 @@
-from ..device import NeuronDevice
 import numpy as np
 
+from ..device import NeuronDevice
+
 
 class IonRecorder(NeuronDevice):
     defaults = {
@@ -60,5 +61,7 @@ class IonicCurrentRecorder(_IonicRecorder, slug="current", record=_record_i):
     pass
 
 
-class IonicConcentrationRecorder(_IonicRecorder, slug="concentration", record=_record_c):
+class IonicConcentrationRecorder(
+    _IonicRecorder, slug="concentration", record=_record_c
+):
     pass

bsb_neuron/devices/spike_generator.py

@@ -1,6 +1,7 @@
 from bsb import config
 from bsb.config import types
 from bsb.simulation.targetting import LocationTargetting
+
 from ..device import NeuronDevice
 
 

bsb_neuron/devices/synapse_recorder.py

@@ -1,5 +1,6 @@
-from bsb.simulation.targetting import LocationTargetting
 from bsb import config
+from bsb.simulation.targetting import LocationTargetting
+
 from ..device import NeuronDevice
 
 

bsb_neuron/devices/voltage_recorder.py

@@ -1,6 +1,7 @@
-from ..device import NeuronDevice
-from bsb.simulation.targetting import LocationTargetting
 from bsb import config
+from bsb.simulation.targetting import LocationTargetting
+
+from ..device import NeuronDevice
 
 
 @config.node

bsb_neuron/simulation.py

@@ -1,6 +1,7 @@
 from bsb import config
 from bsb.config import types
 from bsb.simulation.simulation import Simulation
+
 from .cell import NeuronCell
 from .connection import NeuronConnection
 from .device import NeuronDevice

pyproject.toml

@@ -12,7 +12,7 @@ dynamic = ["version", "description"]
 dependencies = [
     "bsb-core>=4.0.0b0,<=4.0.0b9999",
     "nrn-patch>=4.0.0b3,<=4.0.0b9999",
-    "arborize[neuron]>=4.0.0b1,<=4.0.0b9999"
+    "arborize[neuron]>=4.0.0b3,<=4.0.0b9999"
 ]
 
 [project.entry-points."bsb.simulation_backends"]