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Update tutorial and codespace#91

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MilagrosMarin merged 206 commits intomaindatajoint/element-deeplabcut:mainfrom devdatajoint/element-deeplabcut:devCopy head branch name to clipboardOct 18, 2023

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Commits on Dec 17, 2021

• Create README.md

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• add gitignore

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• Initial structure

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• delete notes file

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• Delete .DS_Store

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Commits on Jan 6, 2022

• repo standard items - changelog, contrib

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• Example ingestion in notebook 01

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• minor: remove debug notebook cell

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• new dev branch

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• Refactor readme, remove images, add docker. See details

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• Cleanup: README, versioning, add ToDo notes

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• README+CHANGELOG clarity

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• Merge from CBroz1/dev

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• draft ingest edits

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• new notebook for modeling use

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• recordings.csv edit for new dev

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• See Details

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• Draft notebooks. WIP Integration Tests

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• update NBs 0 - 3

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• Split dlc schema

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• See details. Docker, Notebooks, JupyText, ingest.py

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• revise version info

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• Update notebooks for separate video tables across schemas

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• add Session = session.Session to pipeline.py, from code review

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• Merge pull request #2 from CBroz1/main

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• minor README updates

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• Add citation section

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• Add links to elements.datajoint.org

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• Remove upstream element images to shorten readme

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• Add links

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• Fix format

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• Update text

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• Add link to element.datajoint.org

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• Fix format

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• updates corresponding to element-deeplabcut PR #15

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• Update format

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• Merge pull request #7 from kabilar/main

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Commits on Apr 22, 2022

• Merge branch 'main' of https://github.com/datajoint/workflow-deeplabcut

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• Generalize equipment table

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• Merge from cbroz1:main

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• Add element_interface.utils.ingest_csv_to_table

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• Update workflow_deeplabcut/process.py

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• Update workflow_deeplabcut/process.py

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• Merge pull request #8 from CBroz1/main

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• blackify

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• WIP. See details.

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• WIP: Remaining files from prev commit

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• WIP: migrate fixtures to conftest.py

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• WIP: Integration tests. See details.

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• WIP: More integration tests. See details.

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• WIP: all tests pass locally

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• WIP: minor cleanup

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• WIP: docker edits. notebook revamp. incomplete

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• WIP: jupysync

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• WIP: revise notebooks for new dataset

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• WIP: add visualization notebook

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• WIP: Fix docker

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• Apply suggestion from code review

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• Merge pull request #12 from CBroz1/dev

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Commits on Oct 14, 2022

• Docstrings -> Google style for mkdocs render

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• Add typing info for mkdocs

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• Simplify README, direct to new docs site

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• Add class docstring for Device

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• Update changelog. Add attribs to Device

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• Update CHANGELOG.md

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• Add remaining suggestion from #14

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• Fix typo

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• Merge pull request #15 from CBroz1/main

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• Fixed typo in README

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• Merge pull request #16 from kushalbakshi/main

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Commits on Nov 29, 2022

• Update README.md

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• Merge pull request #17 from tdincer/main

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Commits on Dec 5, 2022

• 🐛 Debug mkdocs notebooks rendering

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• 🐛 Debug mkdocs notebooks rendering 2

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• Merge pull request #18 from CBroz1/main

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Commits on Mar 10, 2023

• Update requirements

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• Update changelog

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• Update command

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• Remove element-interface installation from source

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• Merge pull request #19 from kabilar/main

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Commits on Apr 24, 2023

• Add GitHub Actions workflows

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• Update changelog

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• Merge pull request #20 from kabilar/main

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Commits on Aug 2, 2023

• paths,pipeline moved; train and dlc_reader modif

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• [WIP] Update project path in pose config

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• Merge 'datajoint/workflow/main' into element

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• Move workflow pipeline files

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• Remove jupytext scripts and workflow version

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Commits on Aug 4, 2023

• Rename 03-process -> tutorial

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• merge paths and pipeline files, move to notebooks

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• Update requirements configuration

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• [WIP] Update notebook and mac requirements

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• Merge 'main' of datajoint/element-deeplabcut

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Commits on Aug 8, 2023

• Update name from pipeline to tutorial_pipeline

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• Update intro tutorial notebook

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• Tutorial: major changes & network training tested

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Commits on Aug 19, 2023

• processed_dir can not exist - bug fixed

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• Fix:generate triggers getattribute with model_name

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• add skip_duplicates to generate function

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• change name for clarity to get_trajectory function

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• important change to install dlc[apple_mchips]

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Commits on Sep 6, 2023

• dockerfile and devcontainer files for element-dlc

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• comment image element_dlc code line before merge

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• comment 'S3 location' for DLC-v1 to test dev

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• comment environment line with previous commit

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• test: from python short command in dockerfile

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• setup.py: delete code line about requirements.txt

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• test: Revert two minor comments in dockerfile

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• test: environments and volumes commented in yaml

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• Merge remote-tracking branch 'origin/element-dlc-test' into element-dlc-test

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• Merge pull request #89 from MilagrosMarin/element-dlc-test

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Commits on Oct 6, 2023

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Commits on Oct 12, 2023

• use v2 example data

  

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• Add a tutorial quick test

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• Update model.py

  

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• add notebooks

  

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• correct the name of the pipeline figure

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Commits on Oct 14, 2023

• draft tutorial

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• Merge pull request #90 from MilagrosMarin/element-dlc-test

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