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Merge branch 'element-dlc-test' of https://github.com/MilagrosMarin/e…
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…lement-deeplabcut into element-dlc-test
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MilagrosMarin committed Oct 2, 2023
2 parents cbc6e27 + c94f336 commit 7a0ea4a
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2 changes: 1 addition & 1 deletion .github/workflows/release.yaml
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uses: datajoint/.github/.github/workflows/devcontainer-publish.yaml@main
secrets:
DOCKERHUB_USERNAME: ${{secrets.DOCKERHUB_USERNAME}}
DOCKERHUB_TOKEN: ${{secrets.DOCKERHUB_TOKEN_FOR_ELEMENTS}}
DOCKERHUB_TOKEN: ${{secrets.DOCKERHUB_TOKEN_FOR_ELEMENTS}}
1 change: 0 additions & 1 deletion .github/workflows/test.yaml
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Expand Up @@ -34,4 +34,3 @@ jobs:
python_version=${{matrix.py_ver}}
black element_deeplabcut --check --verbose --target-version py${python_version//.}
black notebooks --check --verbose --target-version py${python_version//.}
6 changes: 6 additions & 0 deletions CHANGELOG.md
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Observes [Semantic Versioning](https://semver.org/spec/v2.0.0.html) standard and
[Keep a Changelog](https://keepachangelog.com/en/1.0.0/) convention.

## [0.2.8] - 2023-08-07

+ Update - GitHub Actions with new reusable workflows
+ Update - Readme instructions

## [0.2.7] - 2023-08-04

+ Fix - Update the project path in the pose config file to train the model
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graciously provided by the Mathis Lab.
+ Add - Support for 2d single-animal models

[0.2.8]: https://github.com/datajoint/element-deeplabcut/releases/tag/0.2.8
[0.2.7]: https://github.com/datajoint/element-deeplabcut/releases/tag/0.2.7
[0.2.6]: https://github.com/datajoint/element-deeplabcut/releases/tag/0.2.6
[0.2.5]: https://github.com/datajoint/element-deeplabcut/releases/tag/0.2.5
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29 changes: 28 additions & 1 deletion README.md
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# DataJoint Element - DeepLabCut
[![PyPI version](https://badge.fury.io/py/element-deeplabcut.svg)](http://badge.fury.io/py/element-deeplabcut)

# DataJoint Element for Pose Estimation with DeepLabCut

DataJoint Element for markerless pose estimation with
[DeepLabCut](https://www.deeplabcut.org/). DataJoint Elements collectively standardize
Expand All @@ -18,6 +20,7 @@ tables that can be combined with other Elements to assemble a fully functional p

+ Please fork this repository

<<<<<<< HEAD
+ Clone the repository to your computer

```bash
Expand All @@ -31,13 +34,35 @@ tables that can be combined with other Elements to assemble a fully functional p
```

+ [Interactive tutorial on GitHub Codespaces](#interactive-tutorial)
=======
![element-deeplabcut diagram](https://raw.githubusercontent.com/datajoint/element-deeplabcut/main/images/diagram_dlc.svg)

## Experiment Flowchart

![flowchart](https://raw.githubusercontent.com/datajoint/element-deeplabcut/main/images/flowchart.svg)

## Data Pipeline Diagram

![pipeline](https://raw.githubusercontent.com/datajoint/element-deeplabcut/main/images/pipeline.svg)

## Getting Started

+ Install from PyPI

```bash
pip install element-deeplabcut
```

+ [Interactive tutorial](https://github.com/datajoint/workflow-deeplabcut)
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+ [Documentation](https://datajoint.com/docs/elements/element-deeplabcut)

## Support

+ If you need help getting started or run into any errors, please open a GitHub Issue
or contact our team by email at [email protected].
<<<<<<< HEAD

## Interactive Tutorial

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1. We recommend you start by navigating to the `notebooks` directory on the left panel and go through the `tutorial.ipynb` Jupyter notebook. Execute the cells in the notebook to begin your walk through of the tutorial.
1. Once you are done, see the options available to you in the menu in the bottom-left corner. For example, in Codespace you will have an option to `Stop Current Codespace` but when running Dev Container on your own machine the equivalent option is `Reopen folder locally`. By default, GitHub will also automatically stop the Codespace after 30 minutes of inactivity. Once the Codespace is no longer being used, we recommend deleting the Codespace.
=======
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2 changes: 1 addition & 1 deletion element_deeplabcut/version.py
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"""
Package metadata
"""
__version__ = "0.2.7"
__version__ = "0.2.8"
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