update: use topo_sort() in datajoint 0.14.3+

datajoint-company · Oct 14, 2024 · 0cd7666 · 0cd7666
1 parent 9e433fe
commit 0cd7666
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Showing 4 changed files with 7 additions and 7 deletions.
diff --git a/datajoint_utilities/dj_data_copy/db_migration.py b/datajoint_utilities/dj_data_copy/db_migration.py
@@ -36,7 +36,7 @@ def migrate_schema(
 
     tbl_names = [
         tbl_name.split(".")[-1]
-        for tbl_name in dj.Diagram(origin_schema).topological_sort()
+        for tbl_name in dj.Diagram(origin_schema).topo_sort()
     ]
     tbl_names = [
         ".".join(

diff --git a/datajoint_utilities/dj_data_copy/pipeline_cloning.py b/datajoint_utilities/dj_data_copy/pipeline_cloning.py
@@ -15,7 +15,7 @@ def find_part_table_ancestors(table, ancestors={}, verbose=False):
     ancestors[table.full_table_name] = free_table
     for part_table in free_table.parts(as_objects=True):
         ancestors_diagram = dj.Diagram(part_table) - 999
-        for full_table_name in ancestors_diagram.topological_sort():
+        for full_table_name in ancestors_diagram.topo_sort():
             if full_table_name.isdigit():
                 continue
             if (
@@ -68,7 +68,7 @@ def get_restricted_diagram_tables(
 
     # walk up to search for all ancestors
     ancestors_diagram = diagram - 999
-    for ancestor_table_name in ancestors_diagram.topological_sort():
+    for ancestor_table_name in ancestors_diagram.topo_sort():
         if ancestor_table_name.isdigit():
             continue
         if verbose:
@@ -88,7 +88,7 @@ def get_restricted_diagram_tables(
     # walk down to find all descendants
     if not ancestors_only:
         descendants_diagram = diagram + 999
-        for descendant_table_name in descendants_diagram.topological_sort():
+        for descendant_table_name in descendants_diagram.topo_sort():
             if descendant_table_name.isdigit():
                 continue
             if verbose:
@@ -275,7 +275,7 @@ def find_restricted_diagram(self):
         # walk up to search for all ancestors
         ancestors = {}
         ancestors_diagram = self.input_diagram - 999
-        for ancestor_table_name in ancestors_diagram.topological_sort():
+        for ancestor_table_name in ancestors_diagram.topo_sort():
             if ancestor_table_name.isdigit():
                 continue
             if self.verbose:

diff --git a/datajoint_utilities/version.py b/datajoint_utilities/version.py
@@ -1,3 +1,3 @@
 """Package metadata."""
 
-__version__ = "0.3.0"
+__version__ = "0.4.0"
diff --git a/requirements.txt b/requirements.txt
@@ -1,4 +1,4 @@
-datajoint @ git+https://github.com/datajoint/datajoint-python.git
+datajoint>=0.14.3
 termcolor
 slack-sdk
 python-dotenv