Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

kurtosis udaf #4

Merged
merged 9 commits into from
Sep 28, 2024
Merged
Show file tree
Hide file tree
Changes from 8 commits
Commits
File filter

Filter by extension

Filter by extension

Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
1 change: 1 addition & 0 deletions README.md
Original file line number Diff line number Diff line change
Expand Up @@ -86,3 +86,4 @@ SELECT min_by(x, y) FROM VALUES (1, 10), (2, 5), (3, 15), (4, 8) as tab(x, y);
- [x] `min_by(expression1, expression2) -> scalar` - Returns the value of `expression1` associated with the minimum value of `expression2`.
- [x] `skewness(expression) -> scalar` - Computes the skewness value for `expression`.
- [x] `kurtois_pop(expression) -> scalar` - Computes the excess kurtosis (Fisher’s definition) without bias correction.
- [x] `kurtosis(expression) -> scalar` - Computes the excess kurtosis (Fisher’s definition) with bias correction according to the sample size.
195 changes: 195 additions & 0 deletions src/kurtosis.rs
Original file line number Diff line number Diff line change
@@ -0,0 +1,195 @@
// Licensed to the Apache Software Foundation (ASF) under one
// or more contributor license agreements. See the NOTICE file
// distributed with this work for additional information
// regarding copyright ownership. The ASF licenses this file
// to you under the Apache License, Version 2.0 (the
// "License"); you may not use this file except in compliance
// with the License. You may obtain a copy of the License at
//
// http://www.apache.org/licenses/LICENSE-2.0
//
// Unless required by applicable law or agreed to in writing,
// software distributed under the License is distributed on an
// "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
// KIND, either express or implied. See the License for the
// specific language governing permissions and limitations
// under the License.

use arrow::array::{ArrayRef, Float64Array, UInt64Array};
use arrow::datatypes::{DataType, Field};
use datafusion::arrow;
use std::any::Any;
use std::fmt::Debug;

use datafusion::common::cast::as_float64_array;
use datafusion::common::downcast_value;
use datafusion::common::DataFusionError;
use datafusion::error::Result;
use datafusion::logical_expr::function::{AccumulatorArgs, StateFieldsArgs};
use datafusion::logical_expr::{Accumulator, AggregateUDFImpl, Signature, Volatility};
use datafusion::scalar::ScalarValue;

make_udaf_expr_and_func!(
KurtosisFunction,
kurtosis,
x,
"Calculates the excess kurtosis (Fisher’s definition) with bias correction according to the sample size.",
kurtosis_udaf
);

pub struct KurtosisFunction {
signature: Signature,
}

impl Debug for KurtosisFunction {
fn fmt(&self, f: &mut std::fmt::Formatter<'_>) -> std::fmt::Result {
f.debug_struct("KurtosisFunction")
.field("signature", &self.signature)
.finish()
}
}
Comment on lines +44 to +50
Copy link
Contributor

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

I think #[derive(Debug)] macro should serve the purpose here.

Copy link
Collaborator

@demetribu demetribu Sep 27, 2024

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

It seems that an explicit implementation of Debug will be more informative here.


impl Default for KurtosisFunction {
fn default() -> Self {
Self::new()
}
}

impl KurtosisFunction {
pub fn new() -> Self {
Self {
signature: Signature::coercible(vec![DataType::Float64], Volatility::Immutable),
}
}
}

impl AggregateUDFImpl for KurtosisFunction {
fn as_any(&self) -> &dyn Any {
self
}

fn name(&self) -> &str {
"kurtosis"
}

fn signature(&self) -> &Signature {
&self.signature
}

fn return_type(&self, _arg_types: &[DataType]) -> Result<DataType> {
Ok(DataType::Float64)
}

fn accumulator(&self, _acc_args: AccumulatorArgs) -> Result<Box<dyn Accumulator>> {
Ok(Box::new(KurtosisAccumulator::new()))
}

fn state_fields(&self, _args: StateFieldsArgs) -> Result<Vec<Field>> {
Ok(vec![
Field::new("count", DataType::UInt64, true),
Field::new("sum", DataType::Float64, true),
Field::new("sum_sqr", DataType::Float64, true),
Field::new("sum_cub", DataType::Float64, true),
Field::new("sum_four", DataType::Float64, true),
])
}
}

/// Accumulator for calculating the excess kurtosis (Fisher’s definition) with bias correction according to the sample size.
/// This implementation follows the [DuckDB implementation]:
/// <https://github.com/duckdb/duckdb/blob/main/src/core_functions/aggregate/distributive/kurtosis.cpp>
#[derive(Debug, Default)]
pub struct KurtosisAccumulator {
count: u64,
sum: f64,
sum_sqr: f64,
sum_cub: f64,
sum_four: f64,
}

impl KurtosisAccumulator {
pub fn new() -> Self {
Self {
count: 0,
sum: 0.0,
sum_sqr: 0.0,
sum_cub: 0.0,
sum_four: 0.0,
}
}
}

impl Accumulator for KurtosisAccumulator {
fn update_batch(&mut self, values: &[ArrayRef]) -> Result<()> {
let array = as_float64_array(&values[0])?;
for value in array.iter().flatten() {
self.count += 1;
self.sum += value;
self.sum_sqr += value.powi(2);
self.sum_cub += value.powi(3);
self.sum_four += value.powi(4);
}
Ok(())
}

fn merge_batch(&mut self, states: &[ArrayRef]) -> Result<()> {
let counts = downcast_value!(states[0], UInt64Array);
let sums = downcast_value!(states[1], Float64Array);
let sum_sqrs = downcast_value!(states[2], Float64Array);
let sum_cubs = downcast_value!(states[3], Float64Array);
let sum_fours = downcast_value!(states[4], Float64Array);

for i in 0..counts.len() {
let c = counts.value(i);
if c == 0 {
continue;
}
self.count += c;
self.sum += sums.value(i);
self.sum_sqr += sum_sqrs.value(i);
self.sum_cub += sum_cubs.value(i);
self.sum_four += sum_fours.value(i);
}

Ok(())
}

fn evaluate(&mut self) -> Result<ScalarValue> {
if self.count <= 3 {
return Ok(ScalarValue::Float64(None));
}

let count_64 = 1_f64 / self.count as f64;
let m4 = count_64
* (self.sum_four - 4.0 * self.sum_cub * self.sum * count_64
+ 6.0 * self.sum_sqr * self.sum.powi(2) * count_64.powi(2)
- 3.0 * self.sum.powi(4) * count_64.powi(3));

let m2 = (self.sum_sqr - self.sum.powi(2) * count_64) * count_64;
if m2 <= 0.0 {
return Ok(ScalarValue::Float64(None));
}

let count = self.count as f64;
let numerator = (count - 1.0) * ((count + 1.0) * m4 / m2.powi(2) - 3.0 * (count - 1.0));
let denominator = (count - 2.0) * (count - 3.0);

let target = numerator / denominator;

Ok(ScalarValue::Float64(Some(target)))
}

fn size(&self) -> usize {
std::mem::size_of_val(self)
}

fn state(&mut self) -> Result<Vec<ScalarValue>> {
Ok(vec![
ScalarValue::from(self.count),
ScalarValue::from(self.sum),
ScalarValue::from(self.sum_sqr),
ScalarValue::from(self.sum_cub),
ScalarValue::from(self.sum_four),
])
}
}
3 changes: 3 additions & 0 deletions src/lib.rs
Original file line number Diff line number Diff line change
Expand Up @@ -26,11 +26,13 @@ use datafusion::logical_expr::AggregateUDF;
#[macro_use]
pub mod macros;
pub mod common;
pub mod kurtosis;
pub mod kurtosis_pop;
pub mod max_min_by;
pub mod mode;
pub mod skewness;
pub mod expr_extra_fn {
pub use super::kurtosis::kurtosis;
pub use super::kurtosis_pop::kurtosis_pop;
pub use super::max_min_by::max_by;
pub use super::max_min_by::min_by;
Expand All @@ -43,6 +45,7 @@ pub fn all_extra_aggregate_functions() -> Vec<Arc<AggregateUDF>> {
mode_udaf(),
max_min_by::max_by_udaf(),
max_min_by::min_by_udaf(),
kurtosis::kurtosis_udaf(),
skewness::skewness_udaf(),
kurtosis_pop::kurtosis_pop_udaf(),
]
Expand Down
71 changes: 71 additions & 0 deletions tests/main.rs
Original file line number Diff line number Diff line change
Expand Up @@ -364,3 +364,74 @@ async fn test_skewness() {
- +-------------------+
"###);
}

#[tokio::test]
async fn test_kurtosis() {
let mut execution = TestExecution::new().await.unwrap();

let actual = execution
.run_and_format("SELECT kurtosis(col) FROM VALUES (1.0), (10.0), (100.0), (10.0), (1.0) as tab(col);")
.await;

insta::assert_yaml_snapshot!(actual, @r###"
- +-------------------+
- "| kurtosis(tab.col) |"
- +-------------------+
- "| 4.777292927667962 |"
- +-------------------+
"###);

let actual = execution
.run_and_format("SELECT kurtosis(col) FROM VALUES ('1'), ('10'), ('100'), ('10'), ('1') as tab(col);")
.await;

insta::assert_yaml_snapshot!(actual, @r###"
- +-------------------+
- "| kurtosis(tab.col) |"
- +-------------------+
- "| 4.777292927667962 |"
- +-------------------+
"###);

let actual = execution
.run_and_format("SELECT kurtosis(col) FROM VALUES (1.0), (2.0), (3.0) as tab(col);")
.await;

insta::assert_yaml_snapshot!(actual, @r###"
- +-------------------+
- "| kurtosis(tab.col) |"
- +-------------------+
- "| |"
- +-------------------+
"###);

let actual = execution.run_and_format("SELECT kurtosis(1);").await;

insta::assert_yaml_snapshot!(actual, @r###"
- +--------------------+
- "| kurtosis(Int64(1)) |"
- +--------------------+
- "| |"
- +--------------------+
"###);

let actual = execution.run_and_format("SELECT kurtosis(1.0);").await;

insta::assert_yaml_snapshot!(actual, @r###"
- +----------------------+
- "| kurtosis(Float64(1)) |"
- +----------------------+
- "| |"
- +----------------------+
"###);

let actual = execution.run_and_format("SELECT kurtosis(null);").await;

insta::assert_yaml_snapshot!(actual, @r###"
- +----------------+
- "| kurtosis(NULL) |"
- +----------------+
- "| |"
- +----------------+
"###);
}
Loading