fix mistake using temp file

cyverseuk · Oct 27, 2016 · 2ab9558 · 2ab9558
1 parent 70a8ffc
commit 2ab9558
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diff --git a/agave/lib/templatesubmit.htc b/agave/lib/templatesubmit.htc
@@ -1,5 +1,5 @@
 universe = docker
-docker_image = cyverseuk/renseq:v0.2.2
+docker_image = cyverseuk/renseq:v0.2.3
 
 output = renseq.out
 error = renseq.err

diff --git a/scripts/runRenSeq.sh b/scripts/runRenSeq.sh
@@ -122,7 +122,8 @@ done
 
 echo [`date`] inserting parameters and generating params.xml
 python $basedir/insert_params.py $basedir/param_template.xml whiteList `pwd`/$WHITELIST > params.xml
-python $basedir/insert_params.py params.xml genomeSize $genomesize > params.xml
+python $basedir/insert_params.py params.xml genomeSize $genomesize > temp.xml
+mv temp.xml params.xml
 
 echo [`date`] generating input.xml
 rm input.fofn 2>/dev/null