Parse CellProfiler features #20
Workflow file for this run
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| # This workflow will install Python dependencies, run tests and black with a single version of Python | |
| # For more information see: https://help.github.com/actions/language-and-framework-guides/using-python-with-github-actions | |
| name: Python build | |
| on: | |
| push: | |
| branches: | |
| - main | |
| # Temporary inclusion of master branch during default branch name transition | |
| - master | |
| pull_request: | |
| branches: | |
| - main | |
| # Temporary inclusion of master branch during default branch name transition | |
| - master | |
| jobs: | |
| build: | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| matrix: | |
| python-version: ["3.8", "3.9", "3.10", "3.11"] | |
| os: [ubuntu-latest, macos-latest] | |
| env: | |
| OS: ${{ matrix.os }} | |
| # This is needed to avoid a warning from SQLAlchemy | |
| # https://sqlalche.me/e/b8d9 | |
| # We can remove this once we upgrade to SQLAlchemy >= 2.0 | |
| SQLALCHEMY_SILENCE_UBER_WARNING: "1" | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v2 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| #---------------------------------------------- | |
| # ----- install & configure poetry ----- | |
| #---------------------------------------------- | |
| - name: Install Poetry | |
| run: | | |
| python -m pip install poetry | |
| poetry config virtualenvs.in-project true --local | |
| #---------------------------------------------- | |
| # load cached venv if cache exists | |
| #---------------------------------------------- | |
| - name: Load cached venv | |
| id: cached-poetry-dependencies | |
| uses: actions/cache@v3 | |
| with: | |
| path: .venv | |
| key: venv-${{ runner.os }}-${{ steps.setup-python.outputs.python-version }}-${{ hashFiles('**/poetry.lock') }} | |
| #---------------------------------------------- | |
| # install dependencies if cache does not exist | |
| #---------------------------------------------- | |
| - name: Install dependencies | |
| if: steps.cached-poetry-dependencies.outputs.cache-hit != 'true' | |
| run: poetry install --no-interaction --no-root --all-extras | |
| #---------------------------------------------- | |
| # install pycytominer | |
| #---------------------------------------------- | |
| - name: Install library | |
| run: poetry install --no-interaction --only-root | |
| #---------------------------------------------- | |
| # run test suite and output coverage file | |
| #---------------------------------------------- | |
| - name: Test with pytest | |
| run: | | |
| poetry run pytest |