NF_MAAffymetrix: nasa#99 account for quoted commas

cyouh95 · Jul 2, 2024 · bbbd858 · bbbd858
1 parent c3c9d4d
commit bbbd858
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/Microarray/Affymetrix/Workflow_Documentation/NF_MAAffymetrix/workflow_code/main.nf b/Microarray/Affymetrix/Workflow_Documentation/NF_MAAffymetrix/workflow_code/main.nf
@@ -111,7 +111,7 @@ workflow {
 
     GENERATE_SOFTWARE_TABLE(
       ch_software_versions | unique | collectFile(newLine: true, sort: true, cache: false),
-      ch_runsheet | splitCsv(header: true) | first | map{ row -> row['Array Data File Name'] }
+      ch_runsheet | splitCsv(header: true, quote: '"') | first | map{ row -> row['Array Data File Name'] }
     )
 
     // export meta for post processing usage