ci(mergify): upgrade configuration to current format #2398

Job	Run time
No leftovers	3m 8s
build_test_container	9m 17s
CWL conformance (v1.0, docker)	5m 58s
CWL conformance (v1.0, singularity)	6m 10s
CWL conformance (v1.0, podman)	6m 12s
Test on macos-latest	6m 31s
cwltool release test	12m 49s
CWL conformance (v1.1, docker)	7m 14s
Tox (3, 9, lint)	26s
CWL conformance (v1.1, singularity)	7m 9s
Tox (3, 9, unit)	5m 1s
Linters (lintreadme)	42s
CWL conformance (v1.1, podman)	7m 30s
Tox (3, 9, bandit)	29s
Linters (shellcheck)	23s
CWL conformance (v1.2, docker)	8m 45s
Tox (3, 9, mypy)	6m 40s
Linters (pydocstyle)	16s
CWL conformance (v1.2, singularity)	8m 49s
Tox (3, 10, lint)	27s
CWL conformance (v1.2, podman)	9m 6s
Tox (3, 10, unit)	4m 48s
CWL conformance (v1.2, docker, --fast-parser)	8m 41s
Tox (3, 10, bandit)	24s
CWL conformance (v1.3.0-dev1, --relax-path-checks)	5m 36s
Tox (3, 10, mypy)	6m 34s
Tox (3, 11, lint)	27s
Tox (3, 11, unit)	4m 40s
Tox (3, 11, bandit)	20s
Tox (3, 11, mypy)	6m 3s
Tox (3, 12, lint)	29s
Tox (3, 12, unit)	6m 13s
Tox (3, 12, bandit)	23s
Tox (3, 12, mypy)	6m 32s
Tox (3, 13, lint)	44s
Tox (3, 13, unit)	6m 39s
Tox (3, 13, bandit)	34s
Tox (3, 13, mypy)	1m 20s
	2h 53m 29s

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