Added a CI system

.github/workflows/r-ci.yaml

@@ -0,0 +1,60 @@
+name: CI
+
+on:
+  push:
+    branches: [ "main" ]
+  pull_request:
+    branches: [ "main" ]
+
+jobs:
+  build:
+    runs-on: ${{matrix.config.os}}
+
+    name: ${{ matrix.config.os }} (${{ matrix.config.r }})
+
+    strategy:
+      fail-fast: false
+      matrix:
+        config:
+          - {os: macos-latest,   r: 'release'}
+          - {os: macos-12,       r: '4.0.5'}
+          - {os: ubuntu-latest,  r: 'release'}
+          - {os: ubuntu-20.04,   r: '4.1.3'}
+          - {os: windows-latest, r: 'release'}
+
+    env:
+      GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
+      R_KEEP_PKG_SOURCE: yes
+
+    steps:
+      - uses: actions/checkout@v3
+
+      - name: Set up Unix
+        if: runner.os == 'Linux'
+        run: sudo apt-get update -y && sudo apt-get install -y libcurl4-openssl-dev libharfbuzz-dev libfribidi-dev
+
+      - name: Set up MacOS
+        if: runner.os == 'macOS'
+        run: brew install curl glib-openssl harfbuzz fribidi
+
+      - name: Set up windows
+        if: runner.os == 'Windows'
+        run: choco install curl openssl 
+
+      - name: Set up R ${{ matrix.config.r }}
+        uses: r-lib/actions/setup-r@v2
+        with:
+          r-version: ${{ matrix.config.r }}
+          use-public-rspm: true
+
+      - name: Install dependencies
+        run: |
+          install.packages("devtools")
+          library(devtools)
+        shell: Rscript {0}
+
+      - name: Install VariantSurvival
+        run: |
+          devtools::install_github("collaborativebioinformatics/VariantSurvival/VariantSurvival_package")
+          library(VariantSurvival)
+        shell: Rscript {0}