Tests

Update GNN notebook #47

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Run time

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Job	Run time
ruff	2m 48s
doctest (3.9)	2m 48s
pytest (3.9)	13m 26s
doctest (3.10)	2m 45s
mypy (3.9)	3m 47s
pytest (3.10)	10m 54s
doctest (3.11)	2m 51s
ruff-format	3m 25s
mypy (3.10)	3m 23s
mypy (3.11)	3m 5s
pytest (3.11)	11m 5s
pytest (3.12)	13m 2s
mypy (3.12)	4m 1s
doctest (3.12)	3m 0s
	1h 20m 20s