Skip to content

Issues: churchlab/millstone

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

157 Open 472 Closed
157 Open 472 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

ALIGNMENT PIPELINE ERROR
#711 opened Mar 4, 2022 by seamyname
2
Problem uploading samples
#701 opened Oct 31, 2019 by Zymergen-SBRUBAKER
36
Files uploaded through browser remain in /tmp after completion bug
#700 opened Apr 6, 2018 by glebkuznetsov
Generate New Reference Genome: ERROR: More than one record found in handle
#699 opened Mar 7, 2018 by bfurtwa
5
How is extremely high-coverage defined?
#698 opened Mar 7, 2018 by bfurtwa
1
jbrowse contig fail
#696 opened Nov 13, 2017 by MaxSchubert
filter key Gene non-functional
#695 opened Nov 10, 2017 by MaxSchubert
Genbank exported from latest version of Geneious appears to cause error
#694 opened Jul 13, 2017 by glebkuznetsov
OptMAGE only works with MG1655
#691 opened Jan 23, 2017 by dbgoodman
OptMAGE support doesn't work for multi-bp SNVs
#690 opened Jan 23, 2017 by dbgoodman
Jbrowse tracks for deleted alignments get left behind
#689 opened Oct 12, 2016 by dbgoodman
Make queries be case insensitive low priority
#688 opened Sep 27, 2016 by dbgoodman
Velvetg runs out of memory during graph building bug
#687 opened Sep 15, 2016 by glebkuznetsov
Contig calling shows QUEUED_TO_ASSEMBLE even though really ASSEMBLING, sometimes. bug
#686 opened Jun 24, 2016 by glebkuznetsov
JBrowse warning when re-running contig pipeline bug
#685 opened Jun 23, 2016 by glebkuznetsov
2
On variant csv export, what to do about LONG REF/ALT alleles? bug
#683 opened Jun 21, 2016 by dbgoodman
If materialization is kicked off from the variant view UI, and page is refreshes, materialization happens again and they collide. bug
#677 opened Jun 9, 2016 by dbgoodman
3
Look into custom SV calling pipeline parallelization. bug
#676 opened Jun 9, 2016 by glebkuznetsov
Mobile Element finding crashes when contigs are identified across two IS elements bug
#675 opened Jun 1, 2016 by dbgoodman
Make SVs from Brian's Pipeline flip the IS_SV flag bug sv_cleanup
#673 opened May 30, 2016 by dbgoodman
Annotation on SVs (maybe SnpEff?) enhancement sv_cleanup
#672 opened May 30, 2016 by glebkuznetsov
Need to be more stringent when calling deletions using low coverage bug sv_cleanup
#671 opened May 30, 2016 by glebkuznetsov
1
Millstone does not like certain .gb template files, throws "next iteration" error bug
#669 opened May 26, 2016 by mnapolitano89
2
Millstone not collecting unused reads for contig assembly use bug
#668 opened May 26, 2016 by mnapolitano89
4
Make SnpEff an option the user can control enhancement
#667 opened May 23, 2016 by glebkuznetsov
ProTip! What’s not been updated in a month: updated:<2024-10-29.