Release version 0.2.0

chrovis · Feb 20, 2017 · 85237f3 · 85237f3
1 parent bcadee1
commit 85237f3
Show file tree

Hide file tree

Showing 3 changed files with 36 additions and 5 deletions.
diff --git a/CHANGELOG.md b/CHANGELOG.md
@@ -1,5 +1,35 @@
 # Change Log
 
+## [0.2.0] - 2017-02-20
+
+### BREAKING
+
+From this release, ranges are represented as one-based closed intervals. For example,
+
+```clojure
+{:chr "chr1", :start 1, :end 3}
+```
+
+represents the first three bases of chromosome 1.
+
+### Added
+
+* BED file reader/writer. [#20](https://github.com/chrovis/cljam/pull/20)
+* Read unplaced reads in BAM. [#24](https://github.com/chrovis/cljam/pull/24)
+
+### Changed
+
+* Improve performance of reading BAM files. [#22](https://github.com/chrovis/cljam/pull/22)
+* Replace candidate-message function with one in clj-sub-command.
+* Improve performance of reading vcf file. [#29](https://github.com/chrovis/cljam/pull/29)
+
+### Fixed
+
+* Fix a bug in BAM random reader. [#21](https://github.com/chrovis/cljam/pull/21)
+* Read multiple contigs in VCF meta info. [#23](https://github.com/chrovis/cljam/issues/23) [#25](https://github.com/chrovis/cljam/pull/25)
+* Enable decompressUntilEOF of CompressorStreamFactory. [#26](https://github.com/chrovis/cljam/pull/26)
+* Fix bugs in mpileup. [#27](https://github.com/chrovis/cljam/pull/27) [#28](https://github.com/chrovis/cljam/issues/28)
+
 ## [0.1.6] - 2017-01-06
 
 * Sequential reading function for FASTA [#16](https://github.com/chrovis/cljam/pull/16)
@@ -53,6 +83,7 @@
 
 First release
 
+[0.2.0]: https://github.com/chrovis/cljam/compare/0.1.6...0.2.0
 [0.1.6]: https://github.com/chrovis/cljam/compare/0.1.5...0.1.6
 [0.1.5]: https://github.com/chrovis/cljam/compare/0.1.4...0.1.5
 [0.1.4]: https://github.com/chrovis/cljam/compare/0.1.3...0.1.4

diff --git a/README.md b/README.md
@@ -13,7 +13,7 @@ cljam is available as a Maven artifact from [Clojars][clojars].
 To use with Leiningen/Boot, add the following dependency.
 
 ```clojure
-[cljam "0.1.6"]
+[cljam "0.2.0"]
 ```
 
 To use with Maven, add the following dependency.
@@ -22,7 +22,7 @@ To use with Maven, add the following dependency.
 <dependency>
   <groupId>cljam</groupId>
   <artifactId>cljam</artifactId>
-  <version>0.1.6</version>
+  <version>0.2.0</version>
 </dependency>
 ```
 
@@ -99,8 +99,8 @@ Run `lein-bin` plugin and it creates standalone console executable into `target`
 
 ```console
 $ lein with-profile +1.8 bin
-Created /path/to/cljam/target/cljam-0.1.6.jar
-Created /path/to/cljam/target/cljam-0.1.6-standalone.jar
+Created /path/to/cljam/target/cljam-0.2.0.jar
+Created /path/to/cljam/target/cljam-0.2.0-standalone.jar
 Creating standalone executable: /path/to/cljam/target/cljam
 ```
 

diff --git a/project.clj b/project.clj
@@ -1,4 +1,4 @@
-(defproject cljam "0.2.0-SNAPSHOT"
+(defproject cljam "0.2.0"
   :description "A DNA Sequence Alignment/Map (SAM) library for Clojure"
   :url "https://github.com/chrovis/cljam"
   :license {:name "Apache License, Version 2.0"