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nx10 committed Jan 17, 2024
1 parent 103c64d commit c77f49d
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8 changes: 4 additions & 4 deletions README.md
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# ba-timeseries-gradients

[![Build](https://github.com/cmi-dair/ba-timeseries-gradients/actions/workflows/test.yaml/badge.svg?branch=main)](https://github.com/cmi-dair/ba-timeseries-gradients/actions/workflows/test.yaml?query=branch%3Amain)
[![codecov](https://codecov.io/gh/cmi-dair/ba-timeseries-gradients/branch/main/graph/badge.svg?token=22HWWFWPW5)](https://codecov.io/gh/cmi-dair/ba-timeseries-gradients)
[![Build](https://github.com/childmindresearch/ba-timeseries-gradients/actions/workflows/test.yaml/badge.svg?branch=main)](https://github.com/childmindresearch/ba-timeseries-gradients/actions/workflows/test.yaml?query=branch%3Amain)
[![codecov](https://codecov.io/gh/childmindresearch/ba-timeseries-gradients/branch/main/graph/badge.svg?token=22HWWFWPW5)](https://codecov.io/gh/childmindresearch/ba-timeseries-gradients)
[![Code style: black](https://img.shields.io/badge/code%20style-black-000000.svg)](https://github.com/psf/black)
[![L-GPL License](https://img.shields.io/badge/license-L--GPL-blue.svg)](LICENSE)

Expand Down Expand Up @@ -40,7 +40,7 @@ You can also run the CLI through Docker. To do so, run the following command:
docker run \
--volume LOCAL_BIDS_DIR:BIDS_DIR \
--volume LOCAL_OUTPUT_DIR:OUTPUT_DIR \
ghcr.io/cmi-dair/ba-timeseries-gradients:main \
ghcr.io/childmindresearch/ba-timeseries-gradients:main \
[OPTIONS] BIDS_DIR OUTPUT_DIR ANALYSIS_LEVEL
```

Expand All @@ -50,6 +50,6 @@ Similarly, the CLI can also be run in Singularity as follows:
singularity run \
--bind LOCAL_BIDS_DIR:BIDS_DIR \
--bind LOCAL_OUTPUT_DIR:OUTPUT_DIR \
docker://ghcr.io/cmi-dair/ba-timeseries-gradients:main \
docker://ghcr.io/childmindresearch/ba-timeseries-gradients:main \
[OPTIONS] BIDS_DIR OUTPUT_DIR ANALYSIS_LEVEL
```
2 changes: 1 addition & 1 deletion src/ba_timeseries_gradients/parser.py
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Expand Up @@ -19,7 +19,7 @@ def get_parser() -> argparse.ArgumentParser:
description="""Computes gradients for a BIDS dataset. If the target
files are volumetric, they must be in NIFTI format, and a parcellation
file must be provided.""",
epilog="""Issues can be reported at: https://github.com/cmi-dair/ba_timeseries_gradients.""",
epilog="""Issues can be reported at: https://github.com/childmindresearch/ba_timeseries_gradients.""",
formatter_class=argparse.ArgumentDefaultsHelpFormatter,
)

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