RNA-Puzzzles_format

The submission format of RNA-Puzzles

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rna_puzzles_format.py is a script used to generate a standard formatted PDB file for given sequences in a fasta file.
Please refer to '2gdi.fa' for an example.
To use:
$python rna_puzzles_format.py [fasta file] [number of model(optional)] >out.pdb

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format_check.py is a script used to check the format of a submitted PDB file by referring to a standard PDB file of good format. If more than 1 error exist, a 'xx.format_check.txt' file is generated to include all the error reports.
To use:
$python format_check.py [To_be_checked.pdb] [Reference.pdb]