photosynthesis is an R package with modeling tools for C3 photosynthesis, as well as analytical tools for curve-fitting plant ecophysiology responses. It uses the R package units to ensure that parameters are properly specified and transformed before calculations.
From CRAN
install.packages("photosynthesis")or from GitHub
install.packages("remotes")
remotes::install_github("cdmuir/photosynthesis")And load photosynthesis
library("photosynthesis")See the following vignettes for examples of what photosynthesis can do:
- Introduction to the photosynthesis package
- Modeling C3 Photosynthesis: recommendations for common scenarios
- Fitting light response curves
- Fitting CO2 response curves
- Fitting temperature response curves
- Fitting stomatal conductance models
- Fitting light respiration
- Fitting mesophyll conductance
- Fitting pressure-volume curves
- Fitting hydraulic vulnerability curves
- Sensitivity Analysis
- Joseph Stinziano
- Chris Muir
- Cassaundra Roback
- Demi Sargent
- Bridget Murphy
- Patrick Hudson
We welcome comments, criticisms, and especially contributions! GitHub issues are the preferred way to report bugs, ask questions, or request new features. You can submit issues here:
https://github.com/cdmuir/photosynthesis/issues
- Please report any issues or bugs.
- License: MIT
- Get citation information for photosynthesis in R doing
citation(package = 'photosynthesis') - Please note that this project is released with a Contributor Code of Conduct. By participating in this project you agree to abide by its terms.