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@cbg-ethz

Computational Biology Group (CBG)

Beerenwinkel Lab at ETH Zurich

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  1. V-pipe V-pipe Public

    V-pipe is a pipeline designed for analysing NGS data of short viral genomes

    Jupyter Notebook 132 46

Repositories

Showing 10 of 102 repositories
  • mt-SCITE Public

    Tree inference from mitochondrial mutations

    cbg-ethz/mt-SCITE’s past year of commit activity
    Jupyter Notebook 4 1 0 0 Updated Nov 24, 2024
  • covvfit Public

    Fitness estimates of SARS-CoV-2 variants

    cbg-ethz/covvfit’s past year of commit activity
    Python 0 MIT 0 5 2 Updated Nov 23, 2024
  • LolliPop Public

    Deconvolution for Wastewater Genomics

    cbg-ethz/LolliPop’s past year of commit activity
    Jupyter Notebook 4 GPL-3.0 1 1 0 Updated Nov 22, 2024
  • vpipe-biohack24-frontend Public

    Cloudification of V-Pipe: Frontend for the Biohackathon 2024

    cbg-ethz/vpipe-biohack24-frontend’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Nov 22, 2024
  • sr2silo Public

    Wrangling short-read sequencing data for import into SILO

    cbg-ethz/sr2silo’s past year of commit activity
    Python 0 MIT 0 1 1 Updated Nov 22, 2024
  • V-pipe Public

    V-pipe is a pipeline designed for analysing NGS data of short viral genomes

    cbg-ethz/V-pipe’s past year of commit activity
    Jupyter Notebook 132 Apache-2.0 46 31 (3 issues need help) 5 Updated Nov 21, 2024
  • pangolin Public

    BSSE COVID-19 sequencing of test swab samples

    cbg-ethz/pangolin’s past year of commit activity
    Shell 7 3 1 2 Updated Nov 20, 2024
  • VILOCA Public

    VILOCA: VIral LOcal haplotype reconstruction and mutation CAlling for short and long read data

    cbg-ethz/VILOCA’s past year of commit activity
    Python 14 GPL-3.0 0 0 0 Updated Nov 19, 2024
  • Jnotype Public

    Probabilistic modeling of high-dimensional binary data in JAX

    cbg-ethz/Jnotype’s past year of commit activity
    Python 2 0 6 1 Updated Nov 18, 2024
  • oncotreeVIS Public

    An interactive graphical user interface for visualizing mutation tree cohorts.

    cbg-ethz/oncotreeVIS’s past year of commit activity
    JavaScript 0 MIT 0 0 0 Updated Nov 15, 2024
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