Update new python scripts with Myriad env setup

carpentries-incubator · Sep 23, 2024 · a209d45 · a209d45
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commit a209d45
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Showing 3 changed files with 20 additions and 8 deletions.
diff --git a/_includes/snippets_library/UCL_Myriad_sge/parallel/eight-tasks-jobscript.snip b/_includes/snippets_library/UCL_Myriad_sge/parallel/eight-tasks-jobscript.snip
@@ -1,13 +1,17 @@
 ```
 {{ site.remote.bash_shebang }}
 {{ site.sched.comment }} {{ site.sched.flag.name }} parallel-job
-{{ site.sched.comment }} {{ site.sched.flag.queue }} {{ site.sched.queue.testing }}
-{{ site.sched.comment }} -l nodes=1:ppn=8
+{{ site.sched.comment }} -l mem=3G
+{{ site.sched.comment }} -l h_rt=00:30:00
+{{ site.sched.comment }} -pe mpi 8
+{{ site.sched.comment }} -cwd
 
 # Load the computing environment we need
 module load python3
+module unload compilers mpi
+module load mpi4py
 
 # Execute the task
-mpiexec amdahl
+gerun amdahl
 ```
 {: .language-bash}
diff --git a/_includes/snippets_library/UCL_Myriad_sge/parallel/four-tasks-jobscript.snip b/_includes/snippets_library/UCL_Myriad_sge/parallel/four-tasks-jobscript.snip
@@ -1,13 +1,17 @@
 ```
 {{ site.remote.bash_shebang }}
 {{ site.sched.comment }} {{ site.sched.flag.name }} parallel-job
-{{ site.sched.comment }} {{ site.sched.flag.queue }} {{ site.sched.queue.testing }}
-{{ site.sched.comment }} -l nodes=1:ppn=4
+{{ site.sched.comment }} -l mem=3G
+{{ site.sched.comment }} -l h_rt=00:30:00
+{{ site.sched.comment }} -pe mpi 4
+{{ site.sched.comment }} -cwd
 
 # Load the computing environment we need
 module load python3
+module unload compilers mpi
+module load mpi4py
 
 # Execute the task
-mpiexec amdahl
+gerun amdahl
 ```
 {: .language-bash}
diff --git a/_includes/snippets_library/UCL_Myriad_sge/parallel/one-task-jobscript.snip b/_includes/snippets_library/UCL_Myriad_sge/parallel/one-task-jobscript.snip
@@ -1,11 +1,15 @@
 ```
 {{ site.remote.bash_shebang }}
 {{ site.sched.comment }} {{ site.sched.flag.name }} solo-job
-{{ site.sched.comment }} {{ site.sched.flag.queue }} {{ site.sched.queue.testing }}
-{{ site.sched.comment }} -l nodes=1:ppn=1
+{{ site.sched.comment }} -l mem=3G
+{{ site.sched.comment }} -l h_rt=00:30:00
+{{ site.sched.comment }} -pe mpi 1
+{{ site.sched.comment }} -cwd
 
 # Load the computing environment we need
 module load python3
+module unload compilers mpi
+module load mpi4py
 
 # Execute the task
 amdahl