GitHub - cardiosolv/Cardiac-Electrophysiology-Modules: A modular program for parallel post-processing of CardioSolv's CARP simulator's output

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A modular program for parallel post-processing of CardioSolv's CARP simulator's output

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Name		Name	Last commit message	Last commit date
Latest commit History 6 Commits
.gitignore		.gitignore
CMakeLists.txt		CMakeLists.txt
Makefile.example		Makefile.example
README		README
VmFile.cxx		VmFile.cxx
VmFile.h		VmFile.h
act_mod.cxx		act_mod.cxx
amap_mod.cxx		amap_mod.cxx
apdmap_mod.cxx		apdmap_mod.cxx
array_minmax.cxx		array_minmax.cxx
calc_parallel_nodes.cxx		calc_parallel_nodes.cxx
cepmods.h		cepmods.h
df_mod.cxx		df_mod.cxx
dfmap_mod.cxx		dfmap_mod.cxx
di_mod.cxx		di_mod.cxx
dimap_mod.cxx		dimap_mod.cxx
freqmap_mod.cxx		freqmap_mod.cxx
get_igbfile_nodect.cxx		get_igbfile_nodect.cxx
get_mpi_stats.cxx		get_mpi_stats.cxx
get_tfile_nodect.cxx		get_tfile_nodect.cxx
igb_tester.cxx		igb_tester.cxx
initialize_map.cxx		initialize_map.cxx
mesgutils.cxx		mesgutils.cxx
modules_tester.cxx		modules_tester.cxx
negcross_mod.cxx		negcross_mod.cxx
parallel_mapper.cxx		parallel_mapper.cxx
periodmap_mod.cxx		periodmap_mod.cxx
poscross_mod.cxx		poscross_mod.cxx
print_trace.cxx		print_trace.cxx
read_datfile.cxx		read_datfile.cxx
read_igbfile.cxx		read_igbfile.cxx
read_tfile.cxx		read_tfile.cxx
read_tfiles.cxx		read_tfiles.cxx
read_trace.cxx		read_trace.cxx
repol_mod.cxx		repol_mod.cxx
rmap_mod.cxx		rmap_mod.cxx
scapd.cxx		scapd.cxx
serial_mapper.cxx		serial_mapper.cxx
testfile.cxx		testfile.cxx
tline_extract_time.cxx		tline_extract_time.cxx
trace.cxx		trace.cxx
write_datfile.cxx		write_datfile.cxx
write_igbfile.cxx		write_igbfile.cxx
write_tfiles.cxx		write_tfiles.cxx

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Cardiac Electrophysiology Modules
Brock M. Tice
[email protected]

This program is designed to post-process the output of CardioSolv
LLC's CARP simulator, either in serial or in parallel. It is ideally
suited to analyzing large datasets in parallel using MPI.

The "modules" name comes from the fact that it is a library of modules
that may build on each other, and be built upon to create analysis
scripts. The main analysis techniques that people seem to want to use
are already included in the parallel_mapper and trace programs, but it
should be quick and easy to build other utilities as needed.

In general, foo_mod.cxx files implement something meant to deal with
single element data, while foo_map_mod.cxx files build on the
foo_mod.cxx files to analyze data from many elements in parallel. For
a good example, start with the act_mod.cxx and corresponding
amap_mod.cxx files. These demonstrate how to expand from a single
element to many elements.

= Build System =

Currently you should copy Makefile.example to Makefile, and then edit
Makefile appropriately for your machine. A CMake-based build system is
in the works.

Then type "make parallel_mapper", or "make serial_mapper", or "make
trace".  Please note that the library can be compiled either as serial
or as parallel. 'serial_mapper' is just a serial (non-MPI) version of
parallel_mapper, and trace is serial as well, so "make clean" between
parallel_mapper and serial_mapper/trace.