0.6.0

What's Changed

• build: require python >= 3.10 by @jsstevenson in #424
• cicd: only lint in 3.11 by @jsstevenson in #430
• cicd: remove mypy checks by @jsstevenson in #431
• feat: use latest VRS models by @jsstevenson in #426
• cicd: add issue templates/stalebot by @jsstevenson in #429
• style: update to ruff==0.5.0 by @jsstevenson in #425
• build!: use setuptools-scm to declare version by @jsstevenson in #428
• cicd: update precommit by @jsstevenson in #427

Full Changelog: 0.5.0-dev5...0.6.0

0.5.0-dev5

What's Changed

• fix: use enum for source name to ensure proper pydantic serialization by @jsstevenson in #423

Full Changelog: 0.5.0-dev4...0.5.0-dev5

0.5.0-dev4

What's Changed

• build: get disease ETL dependencies by @jsstevenson in #405
• style: add ruff updates by @jsstevenson in #406
• style: pin ruff version to match template by @jsstevenson in #408
• docs: readme glow-up by @jsstevenson in #413
• build: update metadata by @jsstevenson in #412
• chore: update license by @jsstevenson in #411
• cicd: test on 3.12 by @jsstevenson in #410
• cicd: require priority label on PRs by @jsstevenson in #409
• chore: remove unused files by @jsstevenson in #407
• fix: handle multiple CHEBI IDs on a row by @jsstevenson in #416
• fix: prohibit xrefs from hemonc combo therapies by @jsstevenson in #419
• fix: handle label and order by biologic suffix in merge groups by @jsstevenson in #418
• feat: add progress bars/indicators to CLI ETL processes by @jsstevenson in #422

Full Changelog: 0.5.0-dev3...0.5.0-dev4

0.5.0-dev3

What's Changed

• docs: fix env var name for harvard dataverse api key by @korikuzma in #400
• docs: fix click option for sources to update by @korikuzma in #402
• fix: handle brand name lookup KeyError by @jsstevenson in #404

Full Changelog: 0.5.0-dev2...0.5.0-dev3

0.5.0-dev2

What's Changed

• perf: improve disease caching by @jsstevenson in #391
• chore: fix up logging by @jsstevenson in #390
• feat!: refine schemas by @jsstevenson in #392
• feat: sort everything by @jsstevenson in #393
• feat!: remove search result formatting option by @jsstevenson in #394
• feat: set silent to False in CLI by @korikuzma in #398
• docs: update hemonc instructions in readme by @korikuzma in #397

Full Changelog: 0.5.0-dev1...0.5.0-dev2

0.5.0-dev1

What's Changed

• docs: add paper citation by @jsstevenson in #382
• fix: handle hemonc deprecated concept by @jsstevenson in #384
• test: suppress noisy boto logs by default by @jsstevenson in #386
• feat: implement latest data updates by @jsstevenson in #385
• style: fix ruff settings by @jsstevenson in #388
• feat!: use wags-tails for data management by @jsstevenson in #389
• feat!: use abstract interface for DB by @jsstevenson in #378

Full Changelog: 0.5.0-dev0...0.5.0-dev1

0.5.0-dev0

What's Changed

• test: Add test for DiseaseIndicationBase by @korikuzma in #342
• build(deps): resolve ipython and starlette vulnerabilities by @jsstevenson in #347
• fix: expand wikidata SPARQL query by @jsstevenson in #353
• build: remove requirements.txt files by @jsstevenson in #358
• style: resolve mypy errors by @korikuzma in #369
• cicd: update release.yml (publish python distribution to pypi) by @korikuzma in #367
• chore: remove unused makefile by @jsstevenson in #372
• feat!: use vrs 2.0-alpha models in /normalize by @korikuzma in #364
• cicd: add python3.11 to python-version matrix by @korikuzma in #373
• cicd: add Ruff linting and formatting by @jsstevenson in #376
• build: use pyproject.toml for build configuration by @jsstevenson in #377
• style: remove unnecessary noqa: E501 by @korikuzma in #381
• build: fix package name in pyproject.toml by @korikuzma in #380

Full Changelog: v0.4.0...0.5.0-dev0

0.3.10

What's Changed

• fix: Add test for DiseaseIndicationBase by @korikuzma in #341
• build(deps): resolve ipython and starlette vulnerabilities by @jsstevenson in #346

Full Changelog: v0.3.9...0.3.10

0.4.0

What's Changed

• feat: add manual data extraction override rules by @jsstevenson in #300
• ci: resolve GH Actions warnings by @jsstevenson in #301
• fix(rxnorm): remove NOCODE IDs by @jsstevenson in #298
• fix: correct rules filename by @jsstevenson in #302
• refactor!: changes to help with serverless (staging) by @korikuzma in #307
• fix(gtop): handle guide to pharmacology data updates by @jsstevenson in #308
• docs: add license by @jsstevenson in #321
• ci: initial overhaul of tests by @jsstevenson in #317
• fix: remove script tags from gtop therapy names by @jsstevenson in #324
• refactor: remove unused ID prefixes by @jsstevenson in #320
• feat: use new RxNorm download method by @jsstevenson in #319
• refactor: remove unused classes/imports by @jsstevenson in #318
• fix: pypi package should include all files in etl/ (staging) by @korikuzma in #337
• build: update disease normalizer to >=0.3.1 by @korikuzma in #338

Full Changelog: v0.4.dev0...v0.4.0

0.3.9

What's Changed

• fix: pypi package should include all files in etl/ by @korikuzma in #336
• build: update disease normalizer to ~0.2.19 by @korikuzma in #339

Full Changelog: v0.3.8...v0.3.9