Merge branch 'bzhanglab:master' into master

R/idMappingMetabolites.R

@@ -163,14 +163,14 @@ add_prefix <- function(x, sourceIdType) {
   uppers <- c("LIPIDMAPS", "CAS")
   if (toupper(sourceIdType) %in% uppers) {
     return(unlist(sapply(x, function(y) {
-      if (grepl(":", y, FIXED = TRUE)) {
+      if (grepl(":", y)) {
         return(y)
       }
       return(paste0(toupper(sourceIdType), ":", toupper(y)))
     })))
   } else {
     return(unlist(sapply(x, function(y) {
-      if (grepl(":", y, fixed = TRUE) && sourceIdType != "swisslipids") {
+      if (grepl(":", y) && sourceIdType != "swisslipids") {
         return(y)
       }
       return(paste0(sourceIdType, ":", y))

README.md

@@ -1,6 +1,6 @@
 # WebGestaltR
 
-[![R-CMD-check](https://github.com/iblacksand/WebGestaltR/actions/workflows/check-standard.yaml/badge.svg)](https://github.com/iblacksand/WebGestaltR/actions/workflows/check-standard.yaml)
+[![R-CMD-check](https://github.com/bzhanglab/WebGestaltR/actions/workflows/check-standard.yaml/badge.svg)](https://github.com/bzhanglab/WebGestaltR/actions/workflows/check-standard.yaml)
 
 > [!IMPORTANT]
 > The new version of WebGestaltR requires Rust, which must be installed on your device prior to installing or updating the package from CRAN. See the installation section for more information.
@@ -28,14 +28,14 @@ After installing Rust, you can install WebGestaltR by running the following comm
 
 ```R
 # install.packages("devtools") # run if devtools not already installed
-devtools::install_github("iblacksand/WebGestaltR")
+devtools::install_github("bzhanglab/WebGestaltR")
 ```
 
-During installation, the Rust compiler will be called to build the computation library used by WebGestaltR. If you run into problems with installation of the new version, please [open a new issue](https://github.com/iblacksand/WebGestaltR/issues/new/choose).
+During installation, the Rust compiler will be called to build the computation library used by WebGestaltR. If you run into problems with installation of the new version, please [open a new issue](https://github.com/bzhanglab/WebGestaltR/issues/new/choose).
 
 ## Changes
 
 > [!NOTE]
-> Besides the change in installation, there should be no difference in how the R package performs for existing use-cases. If you experience any difference in results that are not due to the data-update, that is considered a bug. [Please report the changes you experience in a new issue](https://github.com/iblacksand/WebGestaltR/issues/new/choose).
+> Besides the change in installation, there should be no difference in how the R package performs for existing use-cases. If you experience any difference in results that are not due to the data-update, that is considered a bug. [Please report the changes you experience in a new issue](https://github.com/bzhanglab/WebGestaltR/issues/new/choose).
 
 WebGestaltR's core was re-written in Rust, which dramatically increased performance, with up to 15x the speed of previous versions. The new version also supports metabolomics, with support for 15 different ID types.