updates covviz to latest

brwnj · Aug 22, 2019 · d89cff8 · d89cff8
1 parent da5c67c
commit d89cff8
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Showing 2 changed files with 4 additions and 5 deletions.
diff --git a/main.nf b/main.nf
@@ -231,7 +231,6 @@ process build_covviz_report {
 
     input:
     file ped from report_ch.mix(merged_ch).collect()
-    file roc from roc_ch
     file bed from bed_ch
     file gff
 
@@ -241,8 +240,8 @@ process build_covviz_report {
     script:
     """
     covviz --min-samples ${params.minsamples} --sex-chroms ${params.sexchroms} --exclude '${params.exclude}' \
-        --z-threshold ${params.zthreshold} --distance-threshold ${params.distancethreshold} \
-        --slop ${params.slop} --ped ${ped} --gff ${gff} ${bed} ${roc}
+        --skip-norm --z-threshold ${params.zthreshold} --distance-threshold ${params.distancethreshold} \
+        --slop ${params.slop} --ped ${ped} --gff ${gff} ${bed}
     """
 }
 

diff --git a/nextflow.config b/nextflow.config
@@ -58,7 +58,7 @@ process {
         errorStrategy = { task.attempt < 3 ? 'retry' : 'finish' }
     }
     withLabel: 'covviz' {
-        container = 'brwnj/covviz:v1.0.5'
+        container = 'brwnj/covviz:v1.1.1'
     }
 }
 
@@ -85,7 +85,7 @@ manifest {
     name = 'brwnj/smoove-nf'
     author = 'Joe Brown'
     description = "run smoove smoover and with additional QC packaged"
-    version = '1.1.0'
+    version = '1.1.1'
     nextflowVersion = '>=0.32.0'
     homePage = 'https://github.com/brwnj/smoove-nf'
     mainScript = 'main.nf'