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Allow empty input files for CollectAlignmentSummaryMetrics and FastqT…
…oSam (#1859)
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11 changes: 11 additions & 0 deletions
11
testdata/picard/sam/AlignmentSummaryMetrics/summary_alignment_stats_test_empty.sam
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Original file line number | Diff line number | Diff line change |
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@@ -0,0 +1,11 @@ | ||
@HD VN:1.0 SO:coordinate | ||
@SQ SN:chr1 LN:101 UR:file:testdata/net/sf/picard/sam/merger.fasta M5:bd01f7e11515bb6beda8f7257902aa67 | ||
@SQ SN:chr2 LN:101 UR:file:testdata/net/sf/picard/sam/merger.fasta M5:31c33e2155b3de5e2554b693c475b310 | ||
@SQ SN:chr3 LN:101 UR:file:testdata/net/sf/picard/sam/merger.fasta M5:631593c6dd2048ae88dcce2bd505d295 | ||
@SQ SN:chr4 LN:101 UR:file:testdata/net/sf/picard/sam/merger.fasta M5:c60cb92f1ee5b78053c92bdbfa19abf1 | ||
@SQ SN:chr5 LN:101 UR:file:testdata/net/sf/picard/sam/merger.fasta M5:07ebc213c7611db0eacbb1590c3e9bda | ||
@SQ SN:chr6 LN:101 UR:file:testdata/net/sf/picard/sam/merger.fasta M5:7be2f5e7ee39e60a6c3b5b6a41178c6d | ||
@SQ SN:chr7 LN:404 UR:file:testdata/net/sf/picard/sam/merger.fasta M5:da488fc432cdaf2c20c96da473a7b630 | ||
@SQ SN:chr8 LN:202 UR:file:testdata/net/sf/picard/sam/merger.fasta M5:d339678efce576d5546e88b49a487b63 | ||
@RG ID:0 SM:Hi,Momma! LB:whatever PU:me PL:ILLUMINA | ||
@PG ID:samtools PN:samtools VN:1.12 CL:samtools view -H -o summary_alignment_stats_test_empty.sam summary_alignment_stats_test.sam |