Skip to content

Create random_forest.py for gnomAD v4 and make it functional #1212

Create random_forest.py for gnomAD v4 and make it functional

Create random_forest.py for gnomAD v4 and make it functional #1212

Workflow file for this run

name: CI
on:
push:
branches:
- main
pull_request:
jobs:
pylint:
name: Pylint
runs-on: ubuntu-latest
steps:
- name: Checkout
uses: actions/checkout@v3
with:
submodules: recursive
- name: Setup Python 3.11
uses: actions/setup-python@v4
with:
python-version: 3.11
- name: Use pip cache
uses: actions/cache@v3
with:
path: ~/.cache/pip
key: pip-${{ hashFiles('**/requirements*.txt') }}
restore-keys: |
pip-
- name: Install dependencies
run: |
pip install wheel
pip install -r requirements.txt
pip install -r requirements-dev.txt
- name: Check formatting
run: black --check gnomad_qc
- name: Check imports
run: isort --check-only gnomad_qc
- name: Check comment formatting
run: autopep8 --exit-code --diff gnomad_qc
- name: Run Pylint
run: ./lint --disable=W
- name: Check docstrings
run: pydocstyle --match-dir='(?!v2|cuKING).*' gnomad_qc