Suggestions to v4 frequency PR for frequency correction #1182
Workflow file for this run
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name: CI | |
on: | |
push: | |
branches: | |
- main | |
pull_request: | |
jobs: | |
pylint: | |
name: Pylint | |
runs-on: ubuntu-latest | |
steps: | |
- name: Checkout | |
uses: actions/checkout@v2 | |
with: | |
submodules: recursive | |
- name: Setup Python 3.8 | |
uses: actions/setup-python@v2 | |
with: | |
python-version: 3.8 | |
- name: Use pip cache | |
uses: actions/cache@v2 | |
with: | |
path: ~/.cache/pip | |
key: pip-${{ hashFiles('**/requirements*.txt') }} | |
restore-keys: | | |
pip- | |
- name: Install dependencies | |
run: | | |
pip install wheel | |
pip install -r requirements.txt | |
pip install -r requirements-dev.txt | |
- name: Check formatting | |
run: black --check gnomad_qc | |
- name: Check imports | |
run: isort --check-only gnomad_qc | |
- name: Check comment formatting | |
run: autopep8 --exit-code --diff gnomad_qc | |
- name: Run Pylint | |
run: ./lint --disable=W | |
- name: Check docstrings | |
run: pydocstyle --match-dir='(?!v2|cuKING).*' gnomad_qc |