Fix escaping $ in ParSNP template

brinkmanlab · Mar 13, 2020 · a1f5a7f · a1f5a7f
1 parent 3b0789f
commit a1f5a7f
Showing 1 changed file with 2 additions and 2 deletions.
diff --git a/parsnp/ParSNP.xml b/parsnp/ParSNP.xml
@@ -14,8 +14,8 @@
     </requirements>
     <version_command><![CDATA[parsnp -V |& tail -n1]]></version_command>
     <command detect_errors="aggressive"><![CDATA[
-    export MEMORY_LIMIT=`expr ${GALAXY_MEMORY_MB:-0} \* 1000`;
-    [[ $MEMORY_LIMIT -eq 0 ]] && export MEMORY_LIMIT=;
+    export MEMORY_LIMIT=`expr \${GALAXY_MEMORY_MB:-0} \\* 1000`;
+    [[ \$MEMORY_LIMIT -eq 0 ]] && export MEMORY_LIMIT=;
     export GENOME_DIR=\$(mktemp -d -p `pwd`)
     #for $genome in $genomes
         && ln -sf '$genome'