Public repository with the code used in:
Modelling herd immunity requirements in Queensland: impact of vaccination effectiveness, hesitancy, and variants of SARS-CoV-2
Authors:
Paula Sanz-Leon, Lachlan H. W. Hamilton, Sebastian J. Raison, Anna J. X. Pan, Nathan J. Stevenson, Robyn M. Stuart, Romesh G. Abeysuriya, Cliff C. Kerr, Stephen B. Lambert, James A. Roberts.
Journal:
Philosphical Transactions of the Royal Society: Series A. (under review).
Year:
2022
This code contains the following structure:
.
├── code
│ ├── case1a
│ │ └── launcher
│ ├── case1b
│ │ └── launcher
│ ├── case2
│ │ ├── combined_results
│ │ ├── launcher
│ │ └── results
│ ├── covasim_australia
│ ├── figures
│ │ ├── fig01
│ │ ├── fig02
│ │ ├── fig03
│ │ ├── fig04-suppfigs-02-03-08-09-10
│ │ ├── fig05-06-suppfigs-04-07
│ │ ├── fig07-suppfig11
│ │ └── suppfig01
│ ├── input_data
│ └── pop_data
└── paper
└── figures
The models were developed and run with covasim 3.0.7 and sciris 1.1.1.