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![Build Status](https://github.com/hkir-dev/human_brain_atlas_ontology/workflows/CI/badge.svg)

_**Important Note:** The ontologies included in this repository are currently in DRAFT status. This means they are a work in progress and may undergo frequent changes and updates. While we make our best efforts to ensure accuracy and consistency, it's important to note that the contents of this repository are subject to change without notice._

# Human Brain Atlas Ontology

This repository contains an application ontology built by combining ontologised versions of the Allen Institute Human Brain Atlas (HBA) StructureGraph mapped to Uberon.

More information can be found at https://brain-bican.github.io/human_brain_atlas_ontology/
The Allen Structuregraph JSON from which this is built can be found at: https://api.brain-map.org/api/v2/structure_graph_download/10.json

This structuregraph represents that browseable graph of annotations present in the Allen "[Human Brain Guide](https://atlas.brain-map.org/atlas?atlas=265297125)" atlas.

Mappings to Uberon are hosted on the Uberon repo: [uberon-bridge-to-aba.owl](https://raw.githubusercontent.com/obophenotype/uberon/master/src/ontology/bridge/uberon-bridge-to-aba.owl).

## Versions

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### Editors' version

Editors of this ontology should use the edit version, [src/ontology/hbao-edit.owl](src/ontology/hbao-edit.owl)
This ontology is not directly edited. Its structure reflects the structure of the source structuregraph as converted via code on this repo, combined with mappings maintained in the Uberon repo.

## Contact

Please use this GitHub repository's [Issue tracker](https://github.com/brain-bican/human_brain_atlas_ontology/issues) to request new terms/classes or report errors or specific concerns related to the ontology.
Please use this GitHub repository's [Issue tracker](https://github.com/brain-bican/human_brain_atlas_ontology/issues) to request improved mappings to Uberon or report errors or specific concerns related to the ontology.

## Acknowledgements

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