TODO #https://github.com/YaolingYang/SparsePainter https://github.com/SionBayliss/JGI_Seedcorn https://github.com/danjlawson/finestructure4
sudo apt-get install cmake sudo apt-get install libblas-dev liblapack-dev
/home/axel/tools/SparsePainter/SparsePainter -reffile /home/axel/python-projects/Recombination/output/wgs-mapping.tar.gz.filtered.ref.vcf -targetfile /home/axel/python-projects/Recombination/output/targets/5_SRR8204807.vcf -mapfile /home/axel/python-projects/Recombination/output/map.txt -popfile /home/axel/python-projects/Recombination/output/pop.txt -namefile /home/axel/python-projects/Recombination/output/targets/SRR8204807.txt -prob -haploid -chunklength -probstore raw