CI #21
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name: CI | |
on: | |
push: | |
branches: | |
- main | |
tags: | |
- "v*" | |
pull_request: | |
branches: | |
- main | |
schedule: | |
# <minute [0,59]> <hour [0,23]> <day of the month [1,31]> | |
# <month of the year [1,12]> <day of the week [0,6]> | |
# https://pubs.opengroup.org/onlinepubs/9699919799/utilities/crontab.html#tag_20_25_07 | |
# Run every Monday at 10:24:00 PST | |
# (Since these CRONs are used by a lot of people - | |
# let's be nice to the servers and schedule it _not_ on the hour) | |
- cron: "24 18 * * 1" | |
workflow_dispatch: | |
jobs: | |
# Check that all files listed in manifest make it into build | |
check-manifest: | |
runs-on: ubuntu-latest | |
steps: | |
- uses: actions/checkout@v3 | |
- uses: actions/setup-python@v4 | |
with: | |
python-version: "3.x" | |
- run: pip install check-manifest && check-manifest | |
# Check tests pass on multiple Python and OS combinations | |
test: | |
runs-on: ${{ matrix.os }} | |
strategy: | |
fail-fast: false | |
matrix: | |
python-version: [3.9, "3.10", 3.11] | |
os: [ubuntu-latest, macOS-latest, windows-latest] | |
steps: | |
- uses: actions/checkout@v3 | |
- name: Set up Python | |
uses: actions/setup-python@v4 | |
with: | |
python-version: ${{ matrix.python-version }} | |
- uses: extractions/setup-just@v1 | |
env: | |
GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
- name: Install Dependencies | |
run: | | |
python -m pip install --upgrade pip | |
pip install .[test] | |
- uses: actions/cache@v3 | |
id: cache | |
with: | |
path: bioio_sldy/tests/resources | |
key: ${{ hashFiles('scripts/TEST_RESOURCES_HASH.txt') }} | |
- name: Download Test Resources | |
if: steps.cache.outputs.cache-hit != 'true' | |
run: | | |
python scripts/download_test_resources.py --debug | |
- name: Run Tests | |
run: just test | |
- name: Upload Codecov | |
uses: codecov/codecov-action@v3 | |
# Check linting, formating, types, etc. | |
lint: | |
runs-on: ubuntu-latest | |
steps: | |
- uses: actions/checkout@v3 | |
- name: Set up Python | |
uses: actions/setup-python@v4 | |
with: | |
python-version: "3.11" | |
- uses: extractions/setup-just@v1 | |
env: | |
GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
- name: Install Dependencies | |
run: | | |
python -m pip install --upgrade pip | |
pip install .[lint] | |
- name: Lint | |
run: just lint | |
# Publish to PyPI if test, lint, and manifest checks passed | |
publish: | |
if: "success() && startsWith(github.ref, 'refs/tags/')" | |
needs: [check-manifest, test, lint] | |
runs-on: ubuntu-latest | |
environment: release | |
permissions: | |
id-token: write # IMPORTANT: this permission is mandatory for trusted publishing | |
steps: | |
- uses: actions/checkout@v3 | |
- name: Set up Python | |
uses: actions/setup-python@v4 | |
with: | |
python-version: "3.11" | |
- name: Install Dependencies | |
run: | | |
python -m pip install --upgrade pip | |
pip install build wheel | |
- name: Build Package | |
run: | | |
python -m build | |
- name: Publish to PyPI | |
uses: pypa/gh-action-pypi-publish@release/v1 | |
# GitHub does not provide a "all status checks must pass" option | |
# in branch protection settings. Instead, you have to specify exactly | |
# what status checks want to require to pass before merging. However, | |
# naming each individual check would be effectively impossible. | |
# Therefore, by creating this stage in every repo in the org we can | |
# require "Report Result" to pass before merging and this stage can | |
# represent the result of the other checks where it only passes if | |
# all the other checks pass. | |
results: | |
if: ${{ always() && github.event_name == 'pull_request' }} | |
needs: [check-manifest, test, lint] | |
runs-on: ubuntu-latest | |
name: Report Result | |
steps: | |
- run: exit 1 | |
# see https://stackoverflow.com/a/67532120/4907315 | |
if: >- | |
${{ | |
contains(needs.*.result, 'failure') | |
|| contains(needs.*.result, 'cancelled') | |
}} | |