Updated metaG notebook

bioinfo-ucsd · Sep 12, 2024 · d14487b · d14487b
1 parent 6711ebc
commit d14487b
Showing 1 changed file with 3 additions and 3 deletions.
diff --git a/modules/08-metagenomics/metaG_analysis_wol1_sub1m.ipynb b/modules/08-metagenomics/metaG_analysis_wol1_sub1m.ipynb
@@ -173,7 +173,7 @@
    "metadata": {},
    "outputs": [],
    "source": [
-    "feature_table <- read.table(file = \"../metag_tutorial_out/features/MI_10_metaG.tsv\", sep = \"\\t\", header = T, row.names = 1, \n",
+    "feature_table <- read.table(file = \"./metag_tutorial_out/features/MI_10_metaG.tsv\", sep = \"\\t\", header = T, row.names = 1, \n",
     "                  skip = 0, comment.char = \"\")\n",
     "taxonomy <- df\n",
     "metadata <- md"
@@ -349,7 +349,7 @@
  ],
  "metadata": {
   "kernelspec": {
-   "display_name": "r_env",
+   "display_name": "R env",
    "language": "R",
    "name": "r_env"
   },
@@ -359,7 +359,7 @@
    "mimetype": "text/x-r-source",
    "name": "R",
    "pygments_lexer": "r",
-   "version": "4.3.3"
+   "version": "4.3.1"
   }
  },
  "nbformat": 4,