Updated environment for metaG

bioinfo-ucsd · Sep 12, 2024 · c34d71e · c34d71e
1 parent 619f1fe
commit c34d71e
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Showing 3 changed files with 4 additions and 1 deletion.
diff --git a/env.yml b/env.yml
@@ -14,6 +14,9 @@ dependencies:
   - bioconda::picard>=2.27.4
 #   - bioconda::gatk4
   - bioconda::fastqc
+  - bioconda::trim_galore
+  - bioconda::bowtie2
+  - bioconda::woltka
 #   - bioconda::multiqc
   # Python
   - conda-forge::python>=3.7

diff --git a/modules/08-metagenomics/.setup.sh.kate-swp b/modules/08-metagenomics/.setup.sh.kate-swp
diff --git a/modules/08-metagenomics/metaG_processing_wol1_sub1m.sh b/modules/08-metagenomics/metaG_processing_wol1_sub1m.sh
@@ -4,7 +4,7 @@
 # Step 0. Activate conda environment
 ##############################################
 
-conda activate mopp
+conda activate bootcamp
 
 
 echo "This is runnning woltka first step against the above50 database (large)"