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bioinfo-ucsd · Sep 11, 2024 · b886814 · b886814
2 parents 13d7af4 + 92678f7
commit b886814
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diff --git a/setup_env.sh b/setup_env.sh
@@ -12,7 +12,8 @@ fi
 
 export PATH="$HOME/miniforge3/bin:$PATH"
 
-mamba env create -f env.yml -y
+script_dir=$(realpath "$0") && dirname "$script_dir"
+mamba env create -f $script_dir/env.yml -y
 mamba run -n bootcamp ipython kernel install --user --name=python_bootcamp --display-name="Python 3 (bootcamp)"
 mamba run -n bootcamp Rscript -e 'IRkernel::installspec(name="R_bootcamp", displayname="R (bootcamp)")'
 

diff --git a/website/_schedules/schedule.md b/website/_schedules/schedule.md
@@ -50,7 +50,8 @@ schedule:
         type: program
         start: "10:00 AM"
         end: "11:00 AM"
-        instructors: ["Terry Gaasterland, *BISB Program Chair*"]
+        instructors: ["Amber Christensen, *BISB Graduate Program Coordinator
+*"]
       - name: Bootcamp Overview
         type: program
         start: "11:00 AM"

diff --git a/website/_staffers/aaron.md b/website/_staffers/aaron.md
@@ -1,6 +1,6 @@
 ---
 name: Aaron Boussina
-role: Internship Panel
+role: archive-Internship Panel
 email: [email protected]
 advisor: ["Shamim Nemati"]
 internship: ["Genentech", "Illumina"]

diff --git a/website/_staffers/adam_klie.md b/website/_staffers/adam_klie.md
@@ -0,0 +1,10 @@
+---
+name: Adam Klie
+role: Guest Instructor
+session: ["Module 4: Introduction to Machine Learning"]
+email: [email protected]
+advisor: ["Hannah Carter"]
+title: 6th year BISB PhD student
+pronouns: he/him
+photo: adam_klie.jpeg
+---
diff --git a/website/_staffers/alex_wenzel.md b/website/_staffers/alex_wenzel.md
@@ -1,6 +1,6 @@
 ---
 name: Alex Wenzel
-role: Guest Instructor
+role: archive-Guest Instructor
 session: ["Breakout: Choosing a PhD Advisor"]
 email: [email protected]
 advisor: ["Jill Mesirov"]

diff --git a/website/_staffers/amber.md b/website/_staffers/amber.md
@@ -0,0 +1,7 @@
+---
+name: Amber Christensen
+role: Chair
+email: [email protected]
+title: ["BISB Graduate Program Coordinator"]
+photo: amber_christensen.jpeg
+---
diff --git a/website/_staffers/arya_fellow.md b/website/_staffers/arya_fellow.md
@@ -4,7 +4,7 @@ role: Fellowship Panel
 email: [email protected]
 advisor: ["Melissa Gymrek"]
 fellowship: ["NSF-GRFP"]
-title: 4th year BISB PhD student
+title: 5th year BISB PhD student
 pronouns: he/him
 photo: arya_massarat.jpg
 ---
diff --git a/website/_staffers/arya_guest.md b/website/_staffers/arya_guest.md
@@ -1,10 +1,10 @@
 ---
 name: Arya Massarat
 role: Guest Instructor
-session: ["Preview: Genome-Wide Association Studies (GWAS)", "Module 7: Software Engineering on a Team", "Module 8: Reproducible Bioinformatics"]
+session: ["Preview: Genome-Wide Association Studies (GWAS)", "Module 7: Software Engineering on a Team", "Module 9: Reproducible Bioinformatics"]
 email: [email protected]
 advisor: ["Melissa Gymrek"]
-title: 4th year BISB PhD student
+title: 5th year BISB PhD student
 pronouns: he/him
 photo: arya_massarat.jpg
 ---
diff --git a/website/_staffers/carlos.md b/website/_staffers/carlos.md
@@ -1,6 +1,6 @@
 ---
 name: Carlos Guzman
-role: Fellowship Panel
+role: archive-Fellowship Panel
 email: [email protected]
 advisor: ["Sven Heinz", "Chris Benner"]
 fellowship: ["NSF-GRFP", "Ford Fellowship", "NIH F31"]

diff --git a/website/_staffers/cristian.md b/website/_staffers/cristian.md
@@ -0,0 +1,9 @@
+---
+name: Cristian Gonzalez-Colin
+role: Internship Panel
+email: [email protected]
+advisor: ["Pandurangan Vijayanand"]
+internship: ["Regeneron"]
+title: 3rd year PhD student
+photo: cristian_gonzalez-colin.jpg
+---
diff --git a/website/_staffers/eric.md b/website/_staffers/eric.md
@@ -1,6 +1,6 @@
 ---
 name: Eric Kofman
-role: Internship Panel
+role: archive-Internship Panel
 email: [email protected]
 advisor: ["Gene Yeo"]
 internship: ["Element Biosciences"]

diff --git a/website/_staffers/fran.md b/website/_staffers/fran.md
@@ -1,6 +1,6 @@
 ---
 name: Fran Perez Estrada
-role: Admin
+role: archive-Admin
 email: [email protected]
 title: BISB Graduate Program Coordinator
 photo: fran_perez_estrada.jpg

diff --git a/website/_staffers/george.md b/website/_staffers/george.md
@@ -1,6 +1,6 @@
 ---
 name: George Armstrong
-role: Internship Panel
+role: archive-Internship Panel
 email: [email protected]
 advisor: ["Rob Knight"]
 internship: ["NVIDIA", "Thermo Fisher Scientific"]

diff --git a/website/_staffers/jessica.md b/website/_staffers/jessica.md
@@ -4,7 +4,7 @@ role: Guest Instructor
 email: [email protected]
 advisor: ["Ludmil Alexandrov"]
 session: ["Diversity Equity and Inclusion (DEI) in the BISB program and at UCSD"]
-title: 3rd year BISB PhD student
+title: 4th year BISB PhD student
 pronouns: she/her
 photo: jessica_au.jpeg
 ---
diff --git a/website/_staffers/kathleen.md b/website/_staffers/kathleen.md
@@ -1,6 +1,6 @@
 ---
 name: Kathleen Dorrestein
-role: Guest Instructor
+role: archive-Guest Instructor
 email: [email protected]
 session: "PhD-Level Scientific Communication"
 title: Staff Research Associate, Dorrestein Lab

diff --git a/website/_staffers/liz.md b/website/_staffers/liz.md
@@ -1,6 +1,6 @@
 ---
 name: Elizabeth Soos
-role: Admin
+role: archive-Admin
 email: [email protected]
 title: BISB/Bioengineering Student Affairs Manager
 photo: 

diff --git a/website/_staffers/mike.md b/website/_staffers/mike.md
@@ -3,7 +3,7 @@ name: Mike Cuoco
 role: Guest Instructor
 email: [email protected]
 advisor: ["Rusty Gage", "Eran Mukamel"]
-title: 4th year BISB PhD student
+title: 5th year BISB PhD student
 pronouns: he/him
 photo: mike_cuoco.jpg
 ---

diff --git a/website/_staffers/mike_fellow.md b/website/_staffers/mike_fellow.md
@@ -4,7 +4,7 @@ role: Fellowship Panel
 email: [email protected]
 advisor: ["Rusty Gage", "Eran Mukamel"]
 fellowship: ["NSF-GRFP"]
-title: 4th year BISB PhD student
+title: 5th year BISB PhD student
 pronouns: he/him
 photo: mike_cuoco.jpg
 ---

diff --git a/website/_staffers/nathan_lewis.md b/website/_staffers/nathan_lewis.md
@@ -2,7 +2,7 @@
 name: Nathan Lewis, PhD
 role: Guest Instructor
 email: [email protected]
-session: "Getting Paid 1: Predoctoral Fellowships"
+session: "Getting Paid: Predoctoral Fellowships & Internships"
 title: Professor, Pediatrics and Bioengineering
 photo: nathan_lewis.jpg
 ---
diff --git a/website/_staffers/sherlyn_weng.md b/website/_staffers/sherlyn_weng.md
@@ -0,0 +1,10 @@
+---
+name: Sherlyn Weng
+role: Guest Instructor
+session: ["Module 8: Introduction to Metagenomics"]
+email: [email protected]
+advisor: ["Karsten Zengler"]
+title: 4th year BISB PhD student
+pronouns: he/him
+photo: sherlyn_weng.jpeg
+---
diff --git a/website/_staffers/tj.md b/website/_staffers/tj.md
@@ -4,7 +4,7 @@ role: Internship Panel
 email: [email protected]
 advisor: ["Hannah Carter"]
 internship: ["Genentech"]
-title: 3rd year BISB PhD student
+title: 4th year BISB PhD student
 pronouns: he/him
 photo: tj_sears.jpg
 ---
diff --git a/website/_staffers/xingzhao.md b/website/_staffers/xingzhao.md
@@ -1,6 +1,6 @@
 ---
 name: Xingzhao Wen
-role: Internship Panel
+role: archive-Internship Panel
 email: [email protected]
 advisor: ["Sheng Zhong"]
 internship: ["Vertex pharmaceuticals"]

diff --git a/website/_staffers/zane_intern.md b/website/_staffers/zane_intern.md
@@ -0,0 +1,10 @@
+---
+name: Zane Koch
+role: Internship Panel
+title: 4th year BISB PhD student
+email: [email protected]
+internship: ["Loyal"]
+advisor: ["Trey Ideker"]
+photo: zane_koch.jpg
+pronouns: he/him
+---
diff --git a/website/assets/images/adam_klie.jpeg b/website/assets/images/adam_klie.jpeg
diff --git a/website/assets/images/amber_christensen.jpeg b/website/assets/images/amber_christensen.jpeg
diff --git a/website/assets/images/sherlyn_weng.jpeg b/website/assets/images/sherlyn_weng.jpeg
diff --git a/website/people.md b/website/people.md
@@ -54,10 +54,10 @@ Program chairs and administrators present information about program operations.
 
 Guest instructors lead modules on specialized topics.
 
-<!--{% for staffer in guests %}
+{% for staffer in guests %}
 {{ staffer }}
 {% endfor %}
-{% endif %}-->
+{% endif %}
 
 <!-- only print next section if these ppl exist -->
 {% assign fellows = site.staffers | where: 'role', 'Fellowship Panel' %}
@@ -67,23 +67,23 @@ Guest instructors lead modules on specialized topics.
 
 These students will sit on a panel for Q&A during the Fellowships session
 
-<!--{% for staffer in fellows %}
+{% for staffer in fellows %}
 {{ staffer }}
 {% endfor %}
-{% endif %}-->
+{% endif %}
 
 <!-- only print next section if these ppl exist -->
 {% assign interns = site.staffers | where: 'role', 'Internship Panel' %}
 {% if interns.size != 0 %}
 
 ## Internships Panelists
 
-<!--These students will sit on a panel for Q&A during the Internships session
+<!--These students will sit on a panel for Q&A during the Internships session-->
 
 {% for staffer in interns %}
 {{ staffer }}
 {% endfor %}
-{% endif %}-->
+{% endif %}
 
 ## Questions?