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chore(deps): update snakemake requirement from <8,>=7.32.0 to >=7.32.0,<9 #584

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@dependabot dependabot bot commented on behalf of github Dec 16, 2024

Updates the requirements on snakemake to permit the latest version.

Release notes

Sourced from snakemake's releases.

v8.25.5

8.25.5 (2024-11-29)

Bug Fixes

  • expand environment variables in --remote-job-local-storage-prefix within the remote job, not the main snakemake job (#3222) (59c86a4)
Changelog

Sourced from snakemake's changelog.

8.25.5 (2024-11-29)

Bug Fixes

  • expand environment variables in --remote-job-local-storage-prefix within the remote job, not the main snakemake job (#3222) (59c86a4)

8.25.4 (2024-11-27)

Bug Fixes

  • clean env vars in apptainer (#3199) (76d5329)
  • ensure that intermediate files in job groups do not cause spurious mtime errors when checking for consistency with output files (#3220) (4ba2bdf)
  • Remove incomplete marker also when drop-metadata is active (#3215) (a4f2e5c)
  • Remove incomplete marker for job finished only after metadata is written (#3197) (6567e5f)
  • Support versioned URLs in Asset class and fix missing versions in Snakemake report (#3203) (f086f6c)
  • update rust-script usage to recent version (v0.35.0) #3183 (#3208) (43885d7)

Documentation

  • clarify continuously updated input section (#3219) (72a6994)
  • Fix typo in CHANGELOG.md (#3198) (0e445ed)
  • refer to Merkle trees instead of "blockchain" in caching.rst (#3216) (282e5d9)
  • remove twitter in favor of bluesky and mastodon (#3217) (231c6df)
  • use "dictionary" not "array" wording in config docs (#3156) (17aed41)

8.25.3 (2024-11-11)

Bug Fixes

  • correctly set params in bash scripts (#3188) (07ddab5)
  • more robust inference of source path that properly respects hosting provider urls without losing release or commit information (#3195) (bd8212b)
  • When generating a DAG or HTML rulegraph, use consistent colours (#3189) (5f651d2)

8.25.2 (2024-11-05)

Bug Fixes

  • include conda pinnings, conda post deploy script, and env modules for detection of software stack changes and corresponding rerun triggers (#3184) (2aeaa46)

8.25.1 (2024-11-01)

Bug Fixes

  • ensure correct topological order when touching group job outputs (#3181) (5924a3e)

... (truncated)

Commits
  • 45cb082 chore(main): release 8.25.5 (#3223)
  • 59c86a4 fix: expand environment variables in --remote-job-local-storage-prefix within...
  • dea213d chore(main): release 8.25.4 (#3201)
  • 282e5d9 docs: refer to Merkle trees instead of "blockchain" in caching.rst (#3216)
  • 72a6994 docs: clarify continuously updated input section (#3219)
  • 4ba2bdf fix: ensure that intermediate files in job groups do not cause spurious mtime...
  • a4f2e5c fix: Remove incomplete marker also when drop-metadata is active (#3215)
  • 231c6df docs: remove twitter in favor of bluesky and mastodon (#3217)
  • f086f6c fix: Support versioned URLs in Asset class and fix missing versions in Snakem...
  • 43885d7 fix: update rust-script usage to recent version (v0.35.0) #3183 (#3208)
  • Additional commits viewable in compare view

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Updates the requirements on [snakemake](https://github.com/snakemake/snakemake) to permit the latest version.
- [Release notes](https://github.com/snakemake/snakemake/releases)
- [Changelog](https://github.com/snakemake/snakemake/blob/main/CHANGELOG.md)
- [Commits](snakemake/snakemake@v7.32.0...v8.25.5)

---
updated-dependencies:
- dependency-name: snakemake
  dependency-type: direct:production
...

Signed-off-by: dependabot[bot] <[email protected]>
@dependabot dependabot bot added the dependencies Pull requests that update a dependency file label Dec 16, 2024
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Coverage Status

coverage: 85.77%. remained the same
when pulling 0a02d26 on dependabot/pip/snakemake-gte-7.32.0-and-lt-9
into 4a6c2ec on main.

@tedil
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tedil commented Dec 16, 2024

@dependabot close

@dependabot dependabot bot closed this Dec 16, 2024
@dependabot dependabot bot deleted the dependabot/pip/snakemake-gte-7.32.0-and-lt-9 branch December 16, 2024 09:00
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