add missing ISBNs #68
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| name: test_coverage | |
| on: | |
| push: | |
| branches: | |
| - main | |
| jobs: | |
| test: | |
| runs-on: ubuntu-latest | |
| env: | |
| R_REMOTES_NO_ERRORS_FROM_WARNINGS: true | |
| GITHUB_PAT: ${{secrets.GH_MEDUSA_TOKEN}} | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - uses: r-lib/actions/setup-r@v2-branch | |
| with: | |
| r-version: '4.1.0' | |
| - uses: r-lib/actions/setup-pandoc@v2-branch | |
| - uses: r-lib/actions/setup-tinytex@v2-branch | |
| - uses: actions/download-artifact@v3 | |
| - name: Cache R packages | |
| uses: actions/cache@v3 | |
| with: | |
| path: ${{ env.R_LIBS_USER }} | |
| key: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1-${{ hashFiles('.github/depends.Rds') }} | |
| restore-keys: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1- | |
| - name: Ubuntu config | |
| run: | | |
| sudo apt-add-repository ppa:ubuntugis/ubuntugis-unstable | |
| sudo apt-get update | |
| sudo apt-get install -y libcurl4-openssl-dev libharfbuzz-dev libfribidi-dev libssl-dev libxml2-dev libudunits2-dev libgdal-dev libgeos-dev libproj-dev libmagick++-dev libavfilter-dev | |
| - name: Install dependencies | |
| run: | | |
| install.packages(c("remotes","rcmdcheck","covr"), repos = "https://cloud.r-project.org") | |
| remotes::install_github("JGCRI/rpackageutils") | |
| remotes::install_deps(dependencies = TRUE) | |
| shell: Rscript {0} | |
| # - name: Test coverage | |
| # run: | | |
| # cov <- covr::package_coverage() | |
| # covr::report(cov, file = "coverage.xml") | |
| # shell: Rscript {0} | |
| - uses: codecov/codecov-action@v3 | |
| with: | |
| # token: ${{secrets.CODECOV_TOKEN_MEDUSA}} | |
| files: ./coverage.xml | |
| verbose: true |