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[table-approve] br_ms_sinan #603

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merged 9 commits into from
May 16, 2024
Merged

[table-approve] br_ms_sinan #603

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69fad8f
table approve
tricktx May 16, 2024
5da10cf
Merge branch 'main' into br-sinan-dengue
tricktx May 16, 2024
5329430
table-approve sinan microdados_dengue
tricktx May 16, 2024
f03700c
table-approve sinan microdados_dengue
tricktx May 16, 2024
2b0f8ca
table approve in sinan
tricktx May 16, 2024
e09e8bb
lint dicionario
tricktx May 16, 2024
f8b583d
lint dicionario
tricktx May 16, 2024
a215725
lint dicionario
tricktx May 16, 2024
5c31110
lint dicionario
tricktx May 16, 2024
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3 changes: 2 additions & 1 deletion models/br_ms_sinan/br_ms_sinan__dicionario.sql
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Original file line number Diff line number Diff line change
Expand Up @@ -4,10 +4,11 @@
schema="br_ms_sinan",
)
}}

select
safe_cast(id_tabela as string) id_tabela,
safe_cast(coluna as string) nome_coluna,
safe_cast(chave as string) chave,
safe_cast(replace(cobertura_temporal, '-1', '(1)') as string) cobertura_temporal,
safe_cast(valor as string) valor
from `basedosdados-staging.br_ms_sinan_staging.dicionario` as t
from `basedosdados-staging.br_ms_sinan_staging.dicionario` as t
101 changes: 97 additions & 4 deletions models/br_ms_sinan/br_ms_sinan__microdados_dengue.sql
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Original file line number Diff line number Diff line change
Expand Up @@ -9,7 +9,7 @@
"range": {"start": 2000, "end": 2025, "interval": 1},
},
cluster_by=["sigla_uf_notificacao", "sigla_uf_residencia"],
labels={"project_id": "basedosdados"},
labels={"tema": "saude"},
)
}}
{%- set columns = adapter.get_columns_in_relation(this) -%}
Expand Down Expand Up @@ -310,6 +310,19 @@ with
safe_cast(outros as string) apresenta_sintoma_outro,
safe_cast(sin_out as string) apresenta_qual_sintoma,
safe_cast(laco_n as string) prova_laco,
case
when dt_choque = ''
then null
else
safe_cast(
format_date(
'%Y-%m-%d',
safe.parse_date(
'%Y%m%d', regexp_replace(dt_choque, r'[^0-9]', '')
)
) as date
)
end data_choque,
safe_cast(hospitaliz as string) internacao,
case
when dt_interna = ''
Expand All @@ -324,7 +337,6 @@ with
) as date
)
end data_internacao,

case
when uf = '11'
then 'RO'
Expand Down Expand Up @@ -427,6 +439,19 @@ with
safe_cast(grav_mioc as string) grave_miocardite,
safe_cast(grav_consc as string) grave_consciencia,
safe_cast(grav_orgao as string) grave_orgaos,
case
when dt_grav = ''
then null
else
safe_cast(
format_date(
'%Y-%m-%d',
safe.parse_date(
'%Y%m%d', regexp_replace(dt_grav, r'[^0-9]', '')
)
) as date
)
end data_sinais_gravidade,
case
when dt_col_hem = ''
then null
Expand Down Expand Up @@ -518,17 +543,54 @@ with
) as date
)
end data_resultado_sorologia1_chikungunya,

case
when dt_soror2 = ''
then null
else
safe_cast(
format_date(
'%Y-%m-%d',
safe.parse_date(
'%Y%m%d', regexp_replace(dt_soror2, r'[^0-9]', '')
)
) as date
)
end data_resultado_sorologia2_chikungunya,
safe_cast(res_chiks1 as string) resultado_sorologia1_chikungunya,
safe_cast(s1_igm as string) sorologia1_igm,
safe_cast(s1_igg as string) sorologia1_igg,
safe_cast(s1_tit1 as string) sorologia1_tit1,
case
when dt_chik_s2 = ''
then null
else
safe_cast(
format_date(
'%Y-%m-%d',
safe.parse_date(
'%Y%m%d', regexp_replace(dt_chik_s2, r'[^0-9]', '')
)
) as date
)
end data_sorologia2_chikungunya,
safe_cast(res_chiks2 as string) resultado_sorologia2_chikungunya,
safe_cast(s2_igm as string) sorologia2_igm,
safe_cast(s2_igg as string) sorologia2_igg,
safe_cast(s2_tit1 as string) sorologia2_tit1,
safe_cast(resul_prnt as string) resultado_prnt,

case
when dt_prnt = ''
then null
else
safe_cast(
format_date(
'%Y-%m-%d',
safe.parse_date(
'%Y%m%d', regexp_replace(dt_prnt, r'[^0-9]', '')
)
) as date
)
end data_prnt,
case
when dt_ns1 = ''
then null
Expand Down Expand Up @@ -879,6 +941,11 @@ with
apresenta_sintoma_outro,
apresenta_qual_sintoma,
prova_laco,
case
when extract(year from data_choque) > extract(year from current_date)
then null
else data_choque
end data_choque,
internacao,
data_internacao,
sigla_uf_internacao,
Expand Down Expand Up @@ -913,6 +980,13 @@ with
grave_consciencia,
grave_orgaos,
data_hematocrito,
case
when
extract(year from data_sinais_gravidade)
> extract(year from current_date)
then null
else data_sinais_gravidade
end data_sinais_gravidade,
hematocrito_maior,
case
when extract(year from data_plaquetas) > extract(year from current_date)
Expand Down Expand Up @@ -941,10 +1015,29 @@ with
sorologia1_igg,
sorologia1_tit1,
resultado_sorologia2_chikungunya,
case
when
extract(year from data_sorologia2_chikungunya)
> extract(year from current_date)
then null
else data_sorologia2_chikungunya
end data_sorologia2_chikungunya,
case
when
extract(year from data_resultado_sorologia2_chikungunya)
> extract(year from current_date)
then null
else data_resultado_sorologia2_chikungunya
end data_resultado_sorologia2_chikungunya,
sorologia2_igm,
sorologia2_igg,
sorologia2_tit1,
resultado_prnt,
case
when extract(year from data_prnt) > extract(year from current_date)
then null
else data_prnt
end data_prnt,
data_ns1,
resultado_ns1,
data_viral,
Expand Down
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