Merge pull request #31 from samhorsfield96/docker #414
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| # Python package | |
| # Create and test a Python package on multiple Python versions. | |
| name: Run tests | |
| on: [push] | |
| jobs: | |
| test-linux: | |
| runs-on: ubuntu-20.04 | |
| strategy: | |
| matrix: | |
| python-version: [3.9] | |
| steps: | |
| - name: checkout source | |
| uses: actions/checkout@v3 | |
| - name: Cache node modules | |
| uses: actions/cache@v3 | |
| env: | |
| cache-name: cache-node-modules | |
| with: | |
| path: models/ggCallerdb.tar.bz2 | |
| key: ${{ runner.os }}-${{ env.cache-name }}- | |
| restore-keys: | | |
| ${{ runner.os }}-build- | |
| ${{ runner.os }}- | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v2 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install Conda environment from environment.yml | |
| uses: mamba-org/provision-with-micromamba@main | |
| with: | |
| cache-env: true | |
| environment-file: environment_linux.yml | |
| - name: Install and run_test.py | |
| shell: bash -l {0} | |
| run: | | |
| python -m pip install --no-deps --ignore-installed . | |
| cd test && python run_test.py | |
| test-macos: | |
| runs-on: macos-latest | |
| strategy: | |
| matrix: | |
| python-version: [3.9] | |
| steps: | |
| - name: checkout source | |
| uses: actions/checkout@v3 | |
| - name: Cache node modules | |
| uses: actions/cache@v3 | |
| env: | |
| cache-name: cache-node-modules | |
| with: | |
| path: models/ggCallerdb.tar.bz2 | |
| key: ${{ runner.os }}-${{ env.cache-name }}- | |
| restore-keys: | | |
| ${{ runner.os }}-build- | |
| ${{ runner.os }}- | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v2 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install Conda environment from environment.yml | |
| uses: mamba-org/provision-with-micromamba@main | |
| with: | |
| cache-env: true | |
| environment-file: environment_macOS.yml | |
| - name: Install and run_test.py | |
| shell: bash -l {0} | |
| run: | | |
| python -m pip install --no-deps --ignore-installed . | |
| cd test && python run_test.py |