A collection of models that can be implemented, simulated and fitted using odin, dust and mcstate.
I implemented a stochastic SIR model, as an example of transmission models. This can be easily extended to more complex epidemiological compartments models.
Then, I implemented a Lotka-Volterra model for 2, 3 and for n>=2 species. The LotkaVolterra.R file contains the classical predator prey model. The LotkaVolterraComp2.R contains the competition model for 2 species. The files containing the competition models for 3 and n>=2 species are named analogously.
I also implemented a Wright-Fisher model. It describes the selection pressures that affect Streptococcus pneumoniae strains which are influenced by vaccination of the human host.