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Achievement: YOLOAchievement: Pull Sharkx3Achievement: Starstruckx2Achievement: Arctic Code Vault Contributor

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Achievement: YOLOAchievement: Pull Sharkx3Achievement: Starstruckx2Achievement: Arctic Code Vault Contributor

Organizations

@PacificBiosciences

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armintoepfer/README.md

About me

I'm a bioinformatician with a computational biology PhD from ETH Zürich. Employed as full-time remote Principal Software Engineer and Associate Director Bioinformatics at PacBio since 2014 and responsible for most of PacBio's analysis tools. My day-to-day business is working on sequence analysis algorithms using hardware-near C++, designing software architectures, tech-leading, and Agile stuff. You can get my attention if you work on specialized bioinformatics algorithms, software architectures, or bare metal.

You can find more info on ArminToepfer.com, LinkedIn, or Twitter.

Get my public key curl https://keybase.io/armintoepfer/pgp_keys.asc | gpg --import

PacBio Tool Highlights

PhD Tool Highlights

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  1. PacificBiosciences/ccs PacificBiosciences/ccs Public

    CCS: Generate Highly Accurate Single-Molecule Consensus Reads (HiFi Reads)

    117 30

  2. PacificBiosciences/pbsv PacificBiosciences/pbsv Public

    pbsv - PacBio structural variant (SV) calling and analysis tools

    Python 132 23

  3. PacificBiosciences/barcoding PacificBiosciences/barcoding Public

    Lima - Demultiplex Barcoded PacBio Samples

    R 65 23

  4. PacificBiosciences/IsoSeq PacificBiosciences/IsoSeq Public

    Iso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads

    192 62

  5. PacificBiosciences/minorseq PacificBiosciences/minorseq Public archive

    Minor Variant Calling and Phasing Tools

    15 6

  6. PacificBiosciences/pbbioconda PacificBiosciences/pbbioconda Public

    PacBio Secondary Analysis Tools on Bioconda. Contains list of PacBio packages available via conda.

    255 45