rework CAPS dataset_description.json

aramis-lab · Aug 6, 2024 · 2bf9fe8 · 2bf9fe8
1 parent 70d1a56
commit 2bf9fe8
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Showing 4 changed files with 650 additions and 95 deletions.
diff --git a/clinica/pipelines/engine.py b/clinica/pipelines/engine.py
@@ -467,7 +467,12 @@ def __init__(
             try:
                 check_caps_folder(self._caps_directory)
             except ClinicaCAPSError as e:
-                desc = build_caps_dataset_description(self._name, self._caps_directory)
+                desc = build_caps_dataset_description(
+                    self._caps_directory,
+                    self._caps_directory,
+                    self._name,
+                    f"subjects/*/*/{self._name}",
+                )
                 raise ClinicaCAPSError(
                     f"{e}\nYou might want to create a 'dataset_description.json' "
                     f"file with the following content:\n{desc}"
@@ -482,7 +487,12 @@ def __init__(
                     or len([f for f in self._caps_directory.iterdir()]) == 0
                 ):
                     self._caps_directory.mkdir(parents=True, exist_ok=True)
-                    write_caps_dataset_description(self._name, self._caps_directory)
+                    write_caps_dataset_description(
+                        self._bids_directory,
+                        self._caps_directory,
+                        self._name,
+                        f"subjects/*/*/{self._name}",
+                    )
                 check_caps_folder(self._caps_directory)
         self._compute_subjects_and_sessions()
         self._init_nodes()