Add a ghaction workflow (runs on PR for now but will make it a cron)

.github/workflows/test_pipelines_anat.yml

@@ -0,0 +1,63 @@
+name: Anat Pipelines Tests
+
+on:
+  push:
+    branches: [dev]
+  pull_request:
+    branches: [dev]
+
+permissions:
+  contents: read
+
+concurrency:
+  group: '${{ github.workflow }} @ ${{ github.event.pull_request.head.label || github.head_ref || github.ref }}'
+  cancel-in-progress: true
+
+jobs:
+  test-pipelines-anat-MacOS:
+    runs-on:
+      - self-hosted
+      - macOS
+    steps:
+      - uses: actions/checkout@v4
+      - uses: snok/install-poetry@v1
+      - name: Run tests for anat pipelines
+        run: |
+          make env.conda
+          source ~/miniconda3/etc/profile.d/conda.sh
+          conda activate "${{ github.workspace }}"/env
+          source "$(brew --prefix)/opt/modules/init/bash"
+          module load clinica.all
+          make install
+          cd test
+          poetry run pytest --verbose \
+          --working_directory=/Volumes/data/working_dir_mac \
+          --input_data_directory=/Volumes/data_ci \
+          --basetemp=/Volumes/data/tmp \
+          --junitxml=./test-reports/non_regression_anat_mac.xml \
+          --disable-warnings \
+          ./nonregression/pipelines/anat
+
+  test-pipelines-anat-Linux:
+    runs-on:
+      - self-hosted
+      - Linux
+    steps:
+      - uses: actions/checkout@v4
+      - uses: snok/install-poetry@v1
+      - name: Run tests for anat pipelines
+        run: |
+          make env.conda
+          source /builds/miniconda/etc/profile.d/conda.sh
+          conda activate "${{ github.workspace }}"/env
+          source /usr/local/Modules/init/profile.sh
+          module load clinica.all
+          make install
+          cd test
+          poetry run pytest --verbose \
+          --working_directory=/mnt/data/ci/working_dir_linux \
+          --input_data_directory=/mnt/data_ci \
+          --basetemp=/mnt/data/ci/tmp \
+          --junitxml=./test-reports/non_regression_anat_linux.xml \
+          --disable-warnings \
+          ./nonregression/pipelines/anat