[ENH] Skip visits for which processed images exist #1191
Workflow file for this run
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: Instantiation Tests | |
| on: | |
| push: | |
| branches: ["dev", "maint-*"] | |
| pull_request: | |
| branches: ["dev", "maint-*"] | |
| permissions: | |
| contents: read | |
| concurrency: | |
| group: '${{ github.workflow }} @ ${{ github.event.pull_request.head.label || github.head_ref || github.ref }}' | |
| cancel-in-progress: true | |
| jobs: | |
| test-instantiation-MacOS: | |
| runs-on: | |
| - self-hosted | |
| - macOS | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Run instantiation tests | |
| run: | | |
| make env.conda | |
| source ~/miniconda3/etc/profile.d/conda.sh | |
| conda activate "${{ github.workspace }}"/env | |
| source "$(brew --prefix)/opt/modules/init/bash" | |
| module load clinica.all | |
| make install | |
| cd test | |
| poetry run pytest --verbose \ | |
| --working_directory=/Volumes/data/working_dir_mac \ | |
| --input_data_directory=/Volumes/data_ci \ | |
| --basetemp=/Volumes/data/tmp \ | |
| --junitxml=./test-reports/instantiation_mac.xml \ | |
| --disable-warnings \ | |
| ./instantiation/ | |
| test-instantiation-Linux: | |
| runs-on: | |
| - self-hosted | |
| - Linux | |
| - test-runner | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Run instantiation tests | |
| run: | | |
| make env.conda | |
| source /builds/miniconda/etc/profile.d/conda.sh | |
| conda activate "${{ github.workspace }}"/env | |
| source /usr/local/Modules/init/profile.sh | |
| module load clinica.all | |
| make install | |
| cd test | |
| poetry run pytest --verbose \ | |
| --working_directory=/mnt/data/ci/working_dir_linux \ | |
| --input_data_directory=/mnt/data_ci \ | |
| --basetemp=/mnt/data/ci/tmp \ | |
| --junitxml=./test-reports/instantiation_linux.xml \ | |
| --disable-warnings \ | |
| ./instantiation/ |