Tidy up (#54) #205

	# This workflow will install Python dependencies, run tests and lint with a single version of Python
	# For more information see: https://docs.github.com/en/actions/automating-builds-and-tests/building-and-testing-python

	name: Python application

	on:
	push:
	branches: ["main"]
	pull_request:
	branches: ["main"]

	permissions:
	contents: read

	jobs:
	build:
	runs-on: ubuntu-latest
	strategy:
	matrix:
	python-version:
	- "3.11"
	- "3.12"
	steps:
	- uses: actions/checkout@v4
	- name: Set up Python ${{ matrix.python-version }}
	uses: actions/setup-python@v5
	with:
	python-version: ${{ matrix.python-version }}
	- name: Install uv
	uses: eifinger/setup-uv@v3

	- name: Set up Python
	run: uv python install ${{ matrix.python-version }}

	- name: Install libhdf5-dev by apt
	run: \|
	sudo apt -y update
	sudo apt -y install libhdf5-dev libnetcdf-dev make pandoc

	- name: uv sync
	run: \|
	uv sync --all-extras --dev

	- name: test with uv
	run: uv run pytest -vv --color=yes --cov=./ --cov-report=xml

	- name: Build docs
	run: \|
	source .venv/bin/activate
	cd docs
	make html

	- uses: codecov/codecov-action@v4
	with:
	fail_ci_if_error: true # optional (default = false)
	files: ./coverage.xml
	flags: unittests # optional
	name: codecov-umbrella # optional
	token: ${{ secrets.CODECOV_TOKEN }} # required
	verbose: true # optional (default = false)

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